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SCNpilot_expt_1000_bf_scaffold_13173

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_13173_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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477..1043
DNA (567bp) protein (189aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Spermidine/putrescine import ATP-binding protein PotA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUP9_9RHIZ
ABC transporter ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_13173_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1040..2200
DNA (1161bp) protein (387aa)
Putrescine transport system permease protein PotH n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD50_9RHIZ rbh
Putrescine transport system permease protein PotH {ECO:0000313|EMBL:EYR78089.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter rbh
SCNpilot_expt_1000_bf_scaffold_13173_3
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2203..2985
DNA (783bp) protein (261aa)
ABC transporter n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT16_9RHIZ
ABC transporter permease protein, putative {ECO:0000313|EMBL:AHK46030.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
ABC-type spermidine/putrescine transport system, permease component II
SCNpilot_expt_1000_bf_scaffold_13173_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3161..4771
DNA (1611bp) protein (537aa)
Heme-binding protein A n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CH28_9RHIZ rbh
ABC-type dipeptide transport system periplasmic component {ECO:0000313|EMBL:EYR81998.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
oligopeptide ABC transporter substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_13173_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5113..5784
DNA (672bp) protein (224aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Rhizobium sp. CF080 RepID=J2J7B6_9RHIZ
ABC-type dipeptide/oligopeptide/nickel transport system permease component {ECO:0000313|EMBL:EYR81999.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
oligopeptide ABC transporter permease protein
SCNpilot_expt_1000_bf_scaffold_13173_6
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6068..6568
DNA (501bp) protein (167aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Rhizobium sp. CF080 RepID=J3BSX5_9RHIZ
Binding-protein-dependent transport system inner membrane component family protein 28 {ECO:0000313|EMBL:CDN54534.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
binding-protein-dependent transport systems inner membrane component; K02034 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_13173_7
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6565..7335
DNA (771bp) protein (257aa)
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component n=1 Tax=Rhizobium sp. CF080 RepID=J2ILU1_9RHIZ rbh
ABC transporter, nucleotide binding/ATPase protein (Oligopeptide) {ECO:0000313|EMBL:CDN54535.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
ABC transporter rbh
SCNpilot_expt_1000_bf_scaffold_13173_8
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7664..8125
DNA (462bp) protein (154aa)
ATPase component of various ABC-type transport systems with duplicated ATPase domain n=1 Tax=Rhizobium sp. CF080 RepID=J3BRZ5_9RHIZ
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGE00885.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
putative ABC transporter ATP binding protein; K02032 peptide/nickel transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_13173_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8115..9398
DNA (1284bp) protein (428aa)
putative aspartate aminotransferase (EC:2.6.1.1); K00839 aminotransferase [EC:2.6.1.-] rbh
Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXG7_9RHIZ rbh
Serine-pyruvate aminotransferase {ECO:0000313|EMBL:EYR79118.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_13173_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9365..10384
DNA (1020bp) protein (340aa)
HTH-type transcriptional regulator CdhR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUP6_9RHIZ rbh
HTH-type transcriptional regulator CdhR {ECO:0000313|EMBL:EYR78085.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
AraC family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_13173_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10460..10798
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD46_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78084.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_13173_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10771..11076)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT14_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78083.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_13173_13
unknown

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comp(11152..11295)
DNA (144bp) protein (48aa)

This feature has no annotations

Displaying 13 items

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