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SCNpilot_expt_1000_bf_scaffold_13258

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_13258_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1558
DNA (1557bp) protein (519aa)
Long-chain-fatty-acid--CoA ligase FadD {ECO:0000313|EMBL:EYR83217.1}; EC=6.2.1.3 {ECO:0000313|EMBL:EYR83217.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
long-chain fatty acid--CoA ligase n=1 Tax=Rhizobium giardinii RepID=UPI0003711866 rbh
fadD; FadD protein rbh
SCNpilot_expt_1000_bf_scaffold_13258_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3067..3303
DNA (237bp) protein (79aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pgi; glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase n=2 Tax=Rhizobium meliloti RepID=K0P0P6_RHIML
SCNpilot_expt_1000_bf_scaffold_13258_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4412..5341)
DNA (930bp) protein (310aa)
Fructokinase Frk {ECO:0000313|EMBL:EYR83220.1}; EC=2.7.1.4 {ECO:0000313|EMBL:EYR83220.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
scrK; fructokinase; K00847 fructokinase [EC:2.7.1.4] rbh
Fructokinase Frk n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CKN1_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_13258_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5404..6102)
DNA (699bp) protein (233aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pyrE; orotate phosphoribosyltransferase; K00762 orotate phosphoribosyltransferase [EC:2.4.2.10]
Orotate phosphoribosyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C4X9_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_13258_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6242..6670)
DNA (429bp) protein (143aa)
Putative membrane protein contains DoxX family domain n=1 Tax=Rhizobium sp. RepID=L0NB95_RHISP
Uncharacterized protein {ECO:0000313|EMBL:EYR83222.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
DoxX family protein; K15977 putative oxidoreductase
SCNpilot_expt_1000_bf_scaffold_13258_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6913..7887)
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C6G0_9RHIZ
Proline racemase {ECO:0000313|EMBL:EYR83228.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_13258_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8032..8838
DNA (807bp) protein (269aa)
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA {ECO:0000256|HAMAP-Rule:MF_00905}; Short=3',5'-cyclic AMP phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_00905};; Short=cAMP phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_00905};; EC=3.1.4.17 {ECO:0000256|HAMAP-Rule:MF_00905};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cpdA; cpdA: 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA (EC:3.1.4.17) rbh
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3WYJ1_RHIFR rbh
SCNpilot_expt_1000_bf_scaffold_13258_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9174..9587
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQ63_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83230.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_13258_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9632..9979)
DNA (348bp) protein (116aa)
Putative lipoprotein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSQ7_9RHIZ
Putative lipoprotein {ECO:0000313|EMBL:EYR83231.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
lipoprotein
Displaying 9 items

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