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SCNpilot_expt_1000_bf_scaffold_13881

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_13881_1

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1..534
DNA (534bp) protein (178aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2BD82_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD60119.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
putative dehydrogenase
SCNpilot_expt_1000_bf_scaffold_13881_2
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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536..1351
DNA (816bp) protein (272aa)
Xylose isomerase protein n=1 Tax=uncultured bacterium RepID=K1ZWR4_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EYD77372.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
putative Xylose isomerase rbh
SCNpilot_expt_1000_bf_scaffold_13881_3

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1353..1667
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AES5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD60121.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
putative L-rhamnose mutarotase
SCNpilot_expt_1000_bf_scaffold_13881_4
Edwardsiella ictaluri, Edwardsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1779..2111)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SCP3_METPP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR68259.1}; TaxID=634503 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Edwardsiella.;" source="Edwardsiella ictaluri (strain 93-146).;"
SCNpilot_expt_1000_bf_scaffold_13881_5
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2260..3177
DNA (918bp) protein (306aa)
Atu n=1 Tax=Burkholderia pseudomallei RepID=UPI00016B1D30
Atu protein {ECO:0000313|EMBL:ELQ17235.1}; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
SCNpilot_expt_1000_bf_scaffold_13881_6
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3226..4137
DNA (912bp) protein (304aa)
LysR family transcriptional regulator n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QGY7_9RHIZ rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:EKF60341.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_13881_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4236..5255)
DNA (1020bp) protein (340aa)
Ribitol operon repressor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUD0_9RHIZ rbh
Ribitol operon repressor {ECO:0000313|EMBL:EYR78687.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator LacI family; K03435 LacI family transcriptional regulator, fructose operon transcriptional repressor rbh
SCNpilot_expt_1000_bf_scaffold_13881_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5539..5703
DNA (165bp) protein (55aa)
D-xylose-binding periplasmic protein XylF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXS9_9RHIZ
ABC-type xylose transport system periplasmic component {ECO:0000313|EMBL:EYR78688.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
monosacharide ABC transporter periplasmic monosacharide-binding protein; K02058 simple sugar transport system substrate-binding protein
Displaying 8 items

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