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SCNpilot_expt_1000_bf_scaffold_15659

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_15659_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..234
DNA (234bp) protein (78aa)
Membrane protein insertase YidC n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0C652_RHILT
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
oxaA; inner membrane protein translocase component YidC; K03217 preprotein translocase subunit YidC
SCNpilot_expt_1000_bf_scaffold_15659_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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371..1024
DNA (654bp) protein (218aa)
Probable GTP-binding protein EngB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3A9_9RHIZ rbh
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative GTP-binding protein engB rbh
SCNpilot_expt_1000_bf_scaffold_15659_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1031..1762)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVS4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83241.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_15659_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1968..2579
DNA (612bp) protein (204aa)
Acetylglutamate kinase {ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.- {ECO:0000256|SAAS:SAAS00277142};; EC=2.7.2.8 {ECO:0000256|SAAS:SAAS00245383};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
argB; protein ArgB; K00930 acetylglutamate kinase [EC:2.7.2.8]
Acetylglutamate kinase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CAK2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_15659_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2609..2845
DNA (237bp) protein (79aa)
Acetylglutamate kinase {ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.- {ECO:0000256|SAAS:SAAS00277142};; EC=2.7.2.8 {ECO:0000256|SAAS:SAAS00245383};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
acetylglutamate kinase (EC:2.7.2.8); K00930 acetylglutamate kinase [EC:2.7.2.8]
Acetylglutamate kinase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CAK2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_15659_6
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2849..3751)
DNA (903bp) protein (301aa)
Putative membrane protein n=1 Tax=Rhizobium sp. CF080 RepID=J2JZW7_9RHIZ rbh
Membrane protein {ECO:0000313|EMBL:KGD86439.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
drug/metabolite transporter permease rbh
SCNpilot_expt_1000_bf_scaffold_15659_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3845..4540
DNA (696bp) protein (232aa)
Pyrimidine 5'-nucleotidase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LIK4_RHITR
Pyrimidine 5'-nucleotidase {ECO:0000313|EMBL:EYR83245.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pyrimidine 5'-nucleotidase
SCNpilot_expt_1000_bf_scaffold_15659_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4769..5272
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D651_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83246.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conserved exported protein of unknown function
SCNpilot_expt_1000_bf_scaffold_15659_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5269..5562
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D651_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83246.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_15659_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5807..6700)
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX80_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR83247.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K06966 rbh
SCNpilot_expt_1000_bf_scaffold_15659_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6876..7601
DNA (726bp) protein (242aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013419}; EC=2.3.1.117 {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013404};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dapD; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase (EC:2.3.1.117); K00674 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117]
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CH78_9RHIZ
Displaying 11 items

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