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SCNpilot_expt_1000_bf_scaffold_15892

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_15892_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..151
DNA (150bp) protein (50aa)
DNA translocase FtsK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJS6_9RHIZ
DNA translocase FtsK {ECO:0000313|EMBL:EYR79655.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ftsK; DNA translocase FtsK; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
SCNpilot_expt_1000_bf_scaffold_15892_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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276..935
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CHE0_AGRT5 rbh
Outer-membrane lipoprotein carrier protein {ECO:0000256|SAAS:SAAS00088851}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
outer-membrane lipoprotein carrier protein rbh
SCNpilot_expt_1000_bf_scaffold_15892_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1072..1878
DNA (807bp) protein (269aa)
Exodeoxyribonuclease III {ECO:0000313|EMBL:EYR79657.1}; EC=3.1.11.2 {ECO:0000313|EMBL:EYR79657.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
xthA3; putative exodeoxyribonuclease III protein; K01142 exodeoxyribonuclease III [EC:3.1.11.2] rbh
Exodeoxyribonuclease III n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EHE4_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_15892_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2110..2565)
DNA (456bp) protein (152aa)
Cyclic nucleotide-binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BZB7_9RHIZ
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:EYR79658.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cyclic nucleotide-binding protein
SCNpilot_expt_1000_bf_scaffold_15892_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2585..3268)
DNA (684bp) protein (228aa)
transcriptional regulator n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000361E620 rbh
Transcriptional regulatory protein BasR {ECO:0000313|EMBL:EYR79659.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
yvrH; transcriptional regulatory protein YvrH rbh
SCNpilot_expt_1000_bf_scaffold_15892_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3595..3900
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVD0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79660.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_15892_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4010..4840
DNA (831bp) protein (277aa)
Aldo/keto reductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY69_9RHIZ rbh
Aldo/keto reductase {ECO:0000313|EMBL:EYR79661.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
yafB; oxidoreductase rbh
SCNpilot_expt_1000_bf_scaffold_15892_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5073..5585)
DNA (513bp) protein (171aa)
putative phosphohistidine phosphatase, SixA; K08296 phosphohistidine phosphatase [EC:3.1.3.-]
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2T8_9RHIZ
Phosphohistidine phosphatase SixA {ECO:0000313|EMBL:EYR79662.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_15892_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5831..6103)
DNA (273bp) protein (91aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
leuC; 3-isopropylmalate dehydratase large subunit; K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
isopropylmalate isomerase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00036DEA08
Displaying 9 items

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