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SCNpilot_expt_1000_bf_scaffold_4001

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4001_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..889)
DNA (888bp) protein (296aa)
Diguanylate cyclase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZF7_9RHIZ rbh
Diguanylate cyclase {ECO:0000313|EMBL:EYR80176.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GGDEF family protein
SCNpilot_expt_1000_bf_scaffold_4001_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1039..2013
DNA (975bp) protein (325aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Sua5 family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUV8_9RHIZ rbh
ywlC; tRNA threonylcarbamoyladenosine biosynthesis protein YwlC rbh
SCNpilot_expt_1000_bf_scaffold_4001_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2026..3456
DNA (1431bp) protein (477aa)
Glycolate oxidase subunit GlcD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ESD2_9RHIZ rbh
Glycolate oxidase subunit GlcD {ECO:0000313|EMBL:EYR80178.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
oxidoreductase, FAD-binding rbh
SCNpilot_expt_1000_bf_scaffold_4001_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3457..5781)
DNA (2325bp) protein (775aa)
Putative flagella associated protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CAH4_9RHIZ rbh
Putative flagella associated protein {ECO:0000313|EMBL:EYR80179.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_4001_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6072..6635
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQB4_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR80180.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4001_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6701..7654)
DNA (954bp) protein (318aa)
4-hydroxybenzoate octaprenyltransferase {ECO:0000256|SAAS:SAAS00188627}; EC=2.5.1.- {ECO:0000256|SAAS:SAAS00188633};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ubiA; 4-hydroxybenzoate octaprenyltransferase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-]
4-hydroxybenzoate octaprenyltransferase UbiA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUV3_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_4001_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8278..9084
DNA (807bp) protein (269aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
purD; phosphoribosylamine--glycine ligase (EC:6.3.4.13); K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13]
Phosphoribosylamine--glycine ligase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQB2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4001_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9190..9654
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CS81_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80186.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4001_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9755..10249)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWX0_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR80187.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4001_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10263..11510)
DNA (1248bp) protein (416aa)
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glyS; glycine tRNA synthetase, beta subunit (EC:6.1.1.14)
Glycine--tRNA ligase beta subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMS2_9RHIZ
Displaying 10 items

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