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SCNpilot_expt_1000_bf_scaffold_4044

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4044_1
Streptomyces sp. PRh5, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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1..1152
DNA (1152bp) protein (384aa)
hypothetical protein n=1 Tax=Mycobacterium sp. 141 RepID=UPI00035E7E20 rbh
Amino acid dehydrogenase {ECO:0000313|EMBL:EXU62312.1}; TaxID=1158056 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. PRh5.;"
FAD dependent oxidoreductase
SCNpilot_expt_1000_bf_scaffold_4044_2
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1182..1571
DNA (390bp) protein (130aa)
Endoribonuclease L-PSP n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YXS6_9PROT
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:EKM99788.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
SCNpilot_expt_1000_bf_scaffold_4044_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1927..3498)
DNA (1572bp) protein (524aa)
6'''-hydroxyparomomycin C oxidase LivQ {ECO:0000313|EMBL:EYR81543.1}; EC=1.1.3.- {ECO:0000313|EMBL:EYR81543.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
6'''-hydroxyparomomycin C oxidase LivQ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5F033_9RHIZ rbh
glucose-methanol-choline oxidoreductase
SCNpilot_expt_1000_bf_scaffold_4044_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3576..4010)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4D0_9RHIZ
Gluconate 2-dehydrogenase subunit 3 {ECO:0000313|EMBL:EYR81542.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4044_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4183..4557)
DNA (375bp) protein (125aa)
glyoxalase/bleomycin resistance protein/dioxygenase; K01759 lactoylglutathione lyase [EC:4.4.1.5]
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D8Q2_9RHIZ
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EYR81541.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_4044_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4780..5088
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZZ5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81540.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4044_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4950..6986)
DNA (2037bp) protein (679aa)
ggt; gamma-glutamyltransferase; K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2] rbh
Gamma-glutamyltranspeptidase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0BY15_RHILT rbh
Gamma-glutamyltranspeptidase {ECO:0000313|EMBL:EJC75292.1}; Flags: Precursor;; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
SCNpilot_expt_1000_bf_scaffold_4044_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7005..7718)
DNA (714bp) protein (238aa)
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VR40_RHILT rbh
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EJC75293.1}; Flags: Precursor;; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
polar amino acid ABC transporter permease rbh
SCNpilot_expt_1000_bf_scaffold_4044_9
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7694..8407)
DNA (714bp) protein (238aa)
ABC transporter, permease protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q987N0_RHILO rbh
ABC transporter permease; K10020 octopine/nopaline transport system permease protein rbh
ABC transporter, permease protein {ECO:0000313|EMBL:BAB53173.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_4044_10
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8475..9326)
DNA (852bp) protein (284aa)
ABC transporter substrate binding protein (Nopaline) n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K4Y0_AGRVS rbh
nocT; ABC transporter substrate binding protein (nopaline); K10018 octopine/nopaline transport system substrate-binding protein rbh
ABC transporter substrate binding protein (Nopaline) {ECO:0000313|EMBL:ACM39928.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_4044_11
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9417..10091)
DNA (675bp) protein (225aa)
UPI0003CDE497 related cluster n=1 Tax=unknown RepID=UPI0003CDE497 rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:ESY80328.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
GntR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_4044_12
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10864..11838)
DNA (975bp) protein (325aa)
Putative sugar kinase YdjH {ECO:0000313|EMBL:AFL50494.1}; EC=2.7.1.- {ECO:0000313|EMBL:AFL50494.1};; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
Uncharacterized protein n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0P3M0_RHIML rbh
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_4044_13
Loktanella cinnabarina, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11887..12576)
DNA (690bp) protein (230aa)
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components n=1 Tax=Loktanella cinnabarina LL-001 RepID=U2Z1V1_9RHOB
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components {ECO:0000313|EMBL:GAD55320.1}; TaxID=1337093 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella cinnabarina LL-001.;"
sugar ABC transporter permease protein
SCNpilot_expt_1000_bf_scaffold_4044_14
Loktanella cinnabarina, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12823..14352)
DNA (1530bp) protein (510aa)
Ribose ABC transport system, ATP-binding protein RbsA n=1 Tax=Loktanella cinnabarina LL-001 RepID=U3ACE6_9RHOB rbh
Ribose ABC transport system, ATP-binding protein RbsA {ECO:0000313|EMBL:GAD55319.1}; TaxID=1337093 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella cinnabarina LL-001.;"
sugar ABC transporter ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_4044_15
Loktanella cinnabarina, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14427..15596)
DNA (1170bp) protein (390aa)
Sugar binding protein of sugar ABC transporter n=1 Tax=Loktanella cinnabarina LL-001 RepID=U3AKQ7_9RHOB rbh
Sugar binding protein of sugar ABC transporter {ECO:0000313|EMBL:GAD55318.1}; TaxID=1337093 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella cinnabarina LL-001.;"
sugar ABC transporter periplasmatic substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_4044_16
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15683..16072)
DNA (390bp) protein (130aa)
dehH; haloacetate dehalogenase DehH (EC:3.8.1.3)
Alpha/beta hydrolase fold n=1 Tax=Loktanella cinnabarina LL-001 RepID=U2Z2P6_9RHOB
Alpha/beta hydrolase family {ECO:0000313|EMBL:AHY47753.1}; TaxID=42256 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
SCNpilot_expt_1000_bf_scaffold_4044_17
unknown

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16108..16236
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4044_18
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16878..17564
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003788479
HAD-superfamily hydrolase, subfamily IA, variant 3 {ECO:0000313|EMBL:CDX31556.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
phosphoglycolate phosphatase
SCNpilot_expt_1000_bf_scaffold_4044_19
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17551..18486)
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0PGX3_RHIML rbh
hypothetical protein rbh
Transcriptional regulator LsrR {ECO:0000313|EMBL:AFL50493.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_expt_1000_bf_scaffold_4044_20
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18579..18707)
DNA (129bp) protein (43aa)
Putative membrane protein n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0PLS1_RHIML
Ribose ABC transporter permease {ECO:0000313|EMBL:KJF70842.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
hypothetical protein
Displaying 20 items

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