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SCNpilot_expt_1000_bf_scaffold_4087

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4087_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..590
DNA (588bp) protein (196aa)
Methionine gamma-lyase MdeA {ECO:0000313|EMBL:EYR81332.1}; EC=4.4.1.11 {ECO:0000313|EMBL:EYR81332.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
O-acetylhomoserine aminocarboxypropyltransferase protein (EC:2.5.1.49)
Methionine gamma-lyase MdeA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3W4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4087_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

539..1075
DNA (537bp) protein (179aa)
Methionine gamma-lyase MdeA {ECO:0000313|EMBL:EYR81332.1}; EC=4.4.1.11 {ECO:0000313|EMBL:EYR81332.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Methionine gamma-lyase MdeA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3W4_9RHIZ
O-acetylhomoserine (thiol)-lyase
SCNpilot_expt_1000_bf_scaffold_4087_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1132..1476
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUW8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81331.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4087_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1477..2727)
DNA (1251bp) protein (417aa)
Polyketide biosynthesis cytochrome P450 PksS {ECO:0000313|EMBL:EYR81330.1}; EC=1.14.-.- {ECO:0000313|EMBL:EYR81330.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cytochrome P450 hydroxylase; K00493 unspecific monooxygenase [EC:1.14.14.1] rbh
Polyketide biosynthesis cytochrome P450 PksS n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CEX5_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_4087_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2793..4547)
DNA (1755bp) protein (585aa)
Gamma-glutamyltranspeptidase {ECO:0000313|EMBL:EYR81327.1}; EC=2.3.2.2 {ECO:0000313|EMBL:EYR81327.1};; EC=3.4.19.13 {ECO:0000313|EMBL:EYR81327.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gamma-glutamyltranspeptidase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2] rbh
Gamma-glutamyltranspeptidase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C2L8_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_4087_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4810..5442
DNA (633bp) protein (211aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
clpp1; ATP-dependent Clp protease, proteolytic subunit; K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] rbh
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ67_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_4087_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5734..7011
DNA (1278bp) protein (426aa)
ATP-dependent protease n=1 Tax=Rhizobium giardinii RepID=UPI00037DA68C rbh
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
clpX; ATP-dependent Clp protease ATP-binding subunit ClpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX rbh
SCNpilot_expt_1000_bf_scaffold_4087_8
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7047..7424)
DNA (378bp) protein (126aa)
Putative uncharacterized protein n=2 Tax=Ketogulonicigenium vulgare RepID=E3F413_KETVY
Uncharacterized protein {ECO:0000313|EMBL:KHJ56139.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4087_9
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8965..9132)
DNA (168bp) protein (56aa)
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
SCNpilot_expt_1000_bf_scaffold_4087_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9345..9635
DNA (291bp) protein (97aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
lon; ATP-dependent protease LA protein; K01338 ATP-dependent Lon protease [EC:3.4.21.53]
Lon protease n=1 Tax=Rhizobium sp. RepID=L0NDL4_RHISP
Displaying 10 items

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