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SCNpilot_expt_1000_bf_scaffold_4088

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4088_1
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..908)
DNA (906bp) protein (302aa)
Uncharacterized protein {ECO:0000313|EMBL:KDB50361.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
SCNpilot_expt_1000_bf_scaffold_4088_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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988..1656
DNA (669bp) protein (223aa)
Putative diguanylate cyclase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2J3_9RHIZ
Putative diguanylate cyclase {ECO:0000313|EMBL:EYR79231.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
SCNpilot_expt_1000_bf_scaffold_4088_3
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1660..1968)
DNA (309bp) protein (103aa)
XRE family transcriptional regulator n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HH13_RHIRD
XRE family transcriptional regulator {ECO:0000313|EMBL:EHJ95609.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
XRE family transcriptional regulator; K07726 putative transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4088_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2333..3403)
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D724_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR79232.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_4088_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3504..3695)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY91_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79233.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4088_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3805..4410)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CI43_9RHIZ rbh
UPF0301 protein SHLA_40c000810 {ECO:0000256|HAMAP-Rule:MF_00758}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K07735 putative transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4088_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4556..5371
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EYP3_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR79235.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4088_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5427..5912
DNA (486bp) protein (162aa)
Hybrid peroxiredoxin hyPrx5 {ECO:0000313|EMBL:EYR79236.1}; EC=1.11.1.15 {ECO:0000313|EMBL:EYR79236.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Hybrid peroxiredoxin hyPrx5 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2J9_9RHIZ rbh
peroxiredoxin-like protein
SCNpilot_expt_1000_bf_scaffold_4088_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5984..6430)
DNA (447bp) protein (149aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rnhA; ribonuclease H (EC:3.1.26.4)
Ribonuclease H n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D728_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4088_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6427..7392)
DNA (966bp) protein (322aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085804}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00301};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00301};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085809};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
thrB; homoserine kinase (EC:2.7.1.39)
Homoserine kinase ThrB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY96_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_4088_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7633..7881)
DNA (249bp) protein (83aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCH0_9RHIZ
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
SCNpilot_expt_1000_bf_scaffold_4088_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8692..9312)
DNA (621bp) protein (207aa)
Putative transmembrane cytochrome oxidase complex biogenesis protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSF6_9RHIZ rbh
Putative transmembrane cytochrome oxidase complex biogenesis protein {ECO:0000313|EMBL:EYR79563.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transmembrane cytochrome oxidase complex biogenesis protein
Displaying 12 items

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