ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4160

Search features with annotation key words

Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4160_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..196
DNA (195bp) protein (65aa)
Putative xylose isomerase domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1T7_9RHIZ
Putative xylose isomerase domain-containing protein {ECO:0000313|EMBL:EYR83906.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
xylose isomerase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_4160_2
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(265..1167)
DNA (903bp) protein (301aa)
fda; fructose-bisphosphate aldolase class 1 (EC:4.1.2.13)
Fructose-bisphosphate aldolase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U7Q0_9RHIZ
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:ENN88574.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_expt_1000_bf_scaffold_4160_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1384..2877
DNA (1494bp) protein (498aa)
Succinate-semialdehyde dehydrogenase GabD {ECO:0000313|EMBL:EYR78347.1}; EC=1.2.1.79 {ECO:0000313|EMBL:EYR78347.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gabD2; succinic semialdehyde dehydrogenase (EC:1.2.1.16); K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Succinate-semialdehyde dehydrogenase GabD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTL1_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_4160_4
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2891..3997
DNA (1107bp) protein (369aa)
General L-amino acid-binding periplasmic protein AapJ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2M2_9RHIZ rbh
General L-amino acid-binding periplasmic protein AapJ {ECO:0000313|EMBL:KEC82210.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
aapJ1; amino acid ABC transporter, substrate-binding component; K09969 general L-amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_4160_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3997..5121
DNA (1125bp) protein (375aa)
Binding-protein-dependent transport system inner membrane component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY02_9RHIZ rbh
Amino acid ABC transporter membrane protein 1, PAAT family {ECO:0000313|EMBL:EYR78349.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
bztB; general L-amino acid transport system permease protein; K09970 general L-amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_4160_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5118..6197
DNA (1080bp) protein (360aa)
General L-amino acid transport system permease protein BztC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EV63_9RHIZ rbh
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EYR78350.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aapM; general L-amino acid transport system permease
SCNpilot_expt_1000_bf_scaffold_4160_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6239..6901
DNA (663bp) protein (221aa)
HTH-type transcriptional regulator McbR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDP0_9RHIZ rbh
HTH-type transcriptional regulator McbR {ECO:0000313|EMBL:EYR78351.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4160_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6986..7441
DNA (456bp) protein (152aa)
ABC transporter; K09972 general L-amino acid transport system ATP-binding protein [EC:3.6.3.-]
ABC transporter n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E3BA6C
ABC-type polar amino acid transport system ATPase component {ECO:0000313|EMBL:EYR78354.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Displaying 8 items

View Taxonomy