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SCNpilot_expt_1000_bf_scaffold_4272

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4272_1
unknown

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comp(2..127)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4272_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(173..1264)
DNA (1092bp) protein (364aa)
Protein AbrB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EWB2_9RHIZ rbh
Protein AbrB {ECO:0000313|EMBL:EYR81764.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative ammonia monooxygenase; K07120 rbh
SCNpilot_expt_1000_bf_scaffold_4272_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2127..2504
DNA (378bp) protein (126aa)
exodeoxyribonuclease V; K01144 exodeoxyribonuclease V [EC:3.1.11.5]
Exodeoxyribonuclease V protein subunit alpha n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ82_9RHIZ
Exodeoxyribonuclease V protein subunit alpha {ECO:0000313|EMBL:EYR81765.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_4272_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2545..3225)
DNA (681bp) protein (227aa)
Putative nodulation protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3Y2_9RHIZ rbh
Putative nodulation protein {ECO:0000313|EMBL:EYR81766.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nodulation protein
SCNpilot_expt_1000_bf_scaffold_4272_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3535..4659)
DNA (1125bp) protein (375aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVL6_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR81767.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4272_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4907..5659
DNA (753bp) protein (251aa)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pdxJ; pyridoxine 5'-phosphate synthase PdxJ (EC:2.6.99.2) rbh
Pyridoxine 5'-phosphate synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4J0_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_4272_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5702..6589)
DNA (888bp) protein (296aa)
Quinone oxidoreductase 2 {ECO:0000313|EMBL:EYR81769.1}; EC=1.6.5.2 {ECO:0000313|EMBL:EYR81769.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Quinone oxidoreductase 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZW3_9RHIZ rbh
NmrA family protein rbh
SCNpilot_expt_1000_bf_scaffold_4272_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6740..7147
DNA (408bp) protein (136aa)
Transcriptional regulator, HxlR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5L1_9RHIZ
Transcriptional regulator, HxlR family {ECO:0000313|EMBL:EYR81770.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
HxlR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4272_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7170..8414
DNA (1245bp) protein (415aa)
2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLA5_9RHIZ rbh
2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase {ECO:0000313|EMBL:EYR81771.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gltD; glutamate synthase small subunit protein
SCNpilot_expt_1000_bf_scaffold_4272_10
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8419..8877)
DNA (459bp) protein (153aa)
aspartate racemase; K01779 aspartate racemase [EC:5.1.1.13]
aspartate racemase n=1 Tax=Sinorhizobium medicae RepID=UPI0003745C72
Aspartate racemase {ECO:0000313|EMBL:ABR60804.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_4272_11
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9291..9755
DNA (465bp) protein (155aa)
transcriptional regulator n=1 Tax=Sinorhizobium medicae RepID=UPI0003796694
ArsR family transcriptional regulator {ECO:0000313|EMBL:KDP75172.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
AsnC family transcriptional regulator; K05800 Lrp/AsnC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4272_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9824..10033)
DNA (210bp) protein (70aa)
cold-shock protein n=1 Tax=Rhizobium giardinii RepID=UPI00037097CC
Cold shock protein {ECO:0000313|EMBL:EYR81773.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family)
SCNpilot_expt_1000_bf_scaffold_4272_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10347..10727)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1H8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81776.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4272_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11138..11779
DNA (642bp) protein (214aa)
Transcription regulator,TetR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPD7_9RHIZ rbh
Transcription regulator,TetR family {ECO:0000313|EMBL:EYR81777.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcription regulator, TetR family rbh
Displaying 14 items

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