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SCNpilot_expt_1000_bf_scaffold_4376

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4376_1
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..442
DNA (441bp) protein (147aa)
Transcriptional regulator, LysR family n=2 Tax=Burkholderia multivorans RepID=B9BNS1_9BURK
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EEE07239.1}; TaxID=513052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CGD2.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4376_2
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(628..1383)
DNA (756bp) protein (252aa)
Probable short chain dehydrogenase n=1 Tax=Bordetella bronchiseptica (strain MO149) RepID=K0MDC6_BORBM
short chain dehydrogenase
Probable short chain dehydrogenase {ECO:0000313|EMBL:CCN21420.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
SCNpilot_expt_1000_bf_scaffold_4376_3
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1402..2205)
DNA (804bp) protein (268aa)
polyamine ABC transporter permease n=1 Tax=Bradyrhizobium japonicum RepID=UPI000375ECC4
Polyamine ABC transporter permease {ECO:0000313|EMBL:KJC45104.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
ABC transporter permease; K02053 putative spermidine/putrescine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_4376_4
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2210..2842)
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00036CAC63
Polyamine ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGM33521.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
binding-protein-dependent transport system inner membrane protein
SCNpilot_expt_1000_bf_scaffold_4376_5
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3414..4469)
DNA (1056bp) protein (352aa)
Extracellular solute-binding protein, family 1 n=1 Tax=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) RepID=Q2RSP8_RHORT
extracellular solute-binding protein; K02055 putative spermidine/putrescine transport system substrate-binding protein
Extracellular solute-binding protein, family 1 {ECO:0000313|EMBL:ABC22847.1}; Flags: Precursor;; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
SCNpilot_expt_1000_bf_scaffold_4376_6
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4492..5604)
DNA (1113bp) protein (371aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
potA9; Spermidine/putrescine import ATP-binding protein PotA (EC:3.6.3.31)
Spermidine/putrescine import ATP-binding protein PotA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUP9_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4376_7
unknown

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comp(5638..5778)
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4376_8
RIFOXYC12_FULL_Chloroflexi_59_14_curated, Chloroflexi, Bacteria

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5789..6649
DNA (861bp) protein (287aa)
Tax=RIFOXYC12_FULL_Chloroflexi_59_14_curated
SCNpilot_expt_1000_bf_scaffold_4376_9
Burkholderia sp. USM B20, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7438..8928
DNA (1491bp) protein (497aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037189EC
Carnitine dehydratase {ECO:0000313|EMBL:KJE52541.1}; TaxID=1571773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. USM B20.;"
aldehyde dehydrogenase family protein
SCNpilot_expt_1000_bf_scaffold_4376_10
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8980..9870
DNA (891bp) protein (297aa)
LysR family transcriptional regulator n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S8S1_9BURK
LysR family transcriptional regulator {ECO:0000313|EMBL:KJK13136.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4376_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10237..10752
DNA (516bp) protein (172aa)
Transcriptional regulator, MarR family n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q136J2_RHOPS
regulatory protein MarR
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ABE39997.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_1000_bf_scaffold_4376_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10749..11525
DNA (777bp) protein (259aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q136J3_RHOPS rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE39996.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_1000_bf_scaffold_4376_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11547..11888
DNA (342bp) protein (114aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q136J4_RHOPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE39995.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_1000_bf_scaffold_4376_14
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12049..12441)
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00036B436C
ArsR family transcriptional regulator {ECO:0000313|EMBL:KGD96966.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
regulatory protein ArsR
SCNpilot_expt_1000_bf_scaffold_4376_15
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12509..13801
DNA (1293bp) protein (431aa)
Sulfide-quinone oxidoreductase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11FZ7_MESSB
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:KGD96967.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
sulfide-quinone reductase
SCNpilot_expt_1000_bf_scaffold_4376_16
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13832..14035
DNA (204bp) protein (68aa)
sulfurtransferase n=1 Tax=Methyloferula stellata RepID=UPI0003800316
Sulfurtransferase {ECO:0000313|EMBL:KGD96968.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4376_17
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14055..15068
DNA (1014bp) protein (338aa)
Membrane fusion protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0AZW8_9RHIZ
membrane fusion protein
Membrane fusion protein {ECO:0000313|EMBL:AGK56744.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_4376_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15065..18271
DNA (3207bp) protein (1069aa)
Nodulation protein NolG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGX1_9RHIZ rbh
Nodulation protein NolG {ECO:0000313|EMBL:EYR79398.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
acriflavin resistance protein
SCNpilot_expt_1000_bf_scaffold_4376_19
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18318..19199)
DNA (882bp) protein (294aa)
Transcriptional regulator AraC family n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K3G5_AGRVS
agpT; AraC family transcriptional regulator
Transcriptional regulator AraC family {ECO:0000313|EMBL:ACM39413.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_4376_20
unknown

Not on your lists

19537..19770
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4376_21
unknown

Not on your lists

19776..19994
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4376_22
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20132..20866
DNA (735bp) protein (245aa)
DNA-binding protein with HTH domain-containing protein n=1 Tax=Rhizobium sp. CF122 RepID=J3BL80_9RHIZ
DNA-binding protein with HTH domain-containing protein {ECO:0000313|EMBL:EJL53731.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
regulatory protein luxr; K07782 LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4376_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21307..21825
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003808CF3
Uncharacterized protein {ECO:0000313|EMBL:EYR78521.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4376_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21822..22166
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003789145
Signal transduction histidine kinase {ECO:0000313|EMBL:EYR78522.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
two component sensor kinase/response regulator hybrid
SCNpilot_expt_1000_bf_scaffold_4376_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22159..24015
DNA (1857bp) protein (619aa)
Two component sensor kinase/response regulator hybrid n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PYL0_9RHIZ
Signal transduction histidine kinase {ECO:0000313|EMBL:EYR78522.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
two component sensor kinase/response regulator hybrid
SCNpilot_expt_1000_bf_scaffold_4376_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24026..25138
DNA (1113bp) protein (371aa)
Response regulator protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JQV8_AGRVS rbh
Response regulator {ECO:0000313|EMBL:EYR78523.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Response regulator protein; K07814 putative two-component system response regulator rbh
SCNpilot_expt_1000_bf_scaffold_4376_27
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25444..26592
DNA (1149bp) protein (383aa)
Methyl-accepting chemotaxis protein n=1 Tax=Sinorhizobium meliloti GR4 RepID=M4IBN0_RHIML
methyl-accepting chemotaxis sensory transducer with Cache sensor; K03406 methyl-accepting chemotaxis protein
Probable chemoreceptor (Methyl-accepting chemotaxis) transmembrane protein {ECO:0000313|EMBL:CAC46476.1}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
Displaying 27 items

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