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SCNpilot_expt_1000_bf_scaffold_4422

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4422_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..1459)
DNA (1458bp) protein (486aa)
RNA polymerase sigma factor RpoD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLG8_9RHIZ
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor
SCNpilot_expt_1000_bf_scaffold_4422_2
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3347..4534)
DNA (1188bp) protein (396aa)
kbl; 2-amino-3-ketobutyrate CoA ligase (EC:2.3.1.29); K00639 glycine C-acetyltransferase [EC:2.3.1.29] rbh
2-amino-3-ketobutyrate coenzyme A ligase {ECO:0000256|HAMAP-Rule:MF_00985}; Short=AKB ligase {ECO:0000256|HAMAP-Rule:MF_00985};; EC=2.3.1.29 {ECO:0000256|HAMAP-Rule:MF_00985};; Glycine acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00985}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
2-amino-3-ketobutyrate coenzyme A ligase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MFH2_RHISN rbh
SCNpilot_expt_1000_bf_scaffold_4422_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4584..5039)
DNA (456bp) protein (152aa)
Glutathione-dependent formaldehyde-activating enzyme S-(Hydroxymethyl)glutathione synthase {ECO:0000313|EMBL:EYR79081.1}; EC=4.4.1.22 {ECO:0000313|EMBL:EYR79081.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Glutathione-dependent formaldehyde-activating enzyme S-(Hydroxymethyl)glutathione synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ENL1_9RHIZ
glutathione-dependent formaldehyde-activating protein
SCNpilot_expt_1000_bf_scaffold_4422_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5158..5886)
DNA (729bp) protein (243aa)
Type 11 methyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CR87_9RHIZ rbh
Type 11 methyltransferase {ECO:0000313|EMBL:EYR79080.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
type 11 methyltransferase rbh
SCNpilot_expt_1000_bf_scaffold_4422_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5999..6769
DNA (771bp) protein (257aa)
Gluconate 5-dehydrogenase Gno {ECO:0000313|EMBL:EYR79079.1}; EC=1.1.1.69 {ECO:0000313|EMBL:EYR79079.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gluconate 5-dehydrogenase (EC:1.1.1.69); K00046 gluconate 5-dehydrogenase [EC:1.1.1.69]
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0KQC4_RHILT
SCNpilot_expt_1000_bf_scaffold_4422_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7250..7720)
DNA (471bp) protein (157aa)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2J0_9RHIZ
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:EYR79078.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
3-demethylubiquinone-9 3-methyltransferase
SCNpilot_expt_1000_bf_scaffold_4422_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7791..9155)
DNA (1365bp) protein (455aa)
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:EYR79077.1}; EC=3.6.4.12 {ECO:0000313|EMBL:EYR79077.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
recQ; ATP-dependent DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
ATP-dependent DNA helicase RecQ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTH8_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4422_8
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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9175..9909
DNA (735bp) protein (245aa)
Putative uncharacterized protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1XXV4_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EGY01901.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
SCNpilot_expt_1000_bf_scaffold_4422_9
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9971..10702)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D6F8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EDQ33491.2}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4422_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10714..12378)
DNA (1665bp) protein (555aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dnaG; DNA primase; K02316 DNA primase [EC:2.7.7.-]
DNA primase DnaG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EV38_9RHIZ rbh
Displaying 10 items

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