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SCNpilot_expt_1000_bf_scaffold_4615

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4615_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..792
DNA (792bp) protein (264aa)
Cystathionine gamma-synthase MetB {ECO:0000313|EMBL:EYR80378.1}; EC=2.5.1.48 {ECO:0000313|EMBL:EYR80378.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cystathionine gamma-synthase (EC:2.5.1.48); K01739 cystathionine gamma-synthase [EC:2.5.1.48]
Cystathionine gamma-synthase MetB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D141_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4615_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

812..1516
DNA (705bp) protein (235aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXR2_9RHIZ rbh
5,10-methenyltetrahydrofolate synthetase
SCNpilot_expt_1000_bf_scaffold_4615_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1480..2757)
DNA (1278bp) protein (426aa)
Major facilitator superfamily protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGP7_9RHIZ rbh
Major facilitator superfamily protein {ECO:0000313|EMBL:EYR80376.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
inner membrane transport protein YeaN rbh
SCNpilot_expt_1000_bf_scaffold_4615_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2754..3431)
DNA (678bp) protein (226aa)
Putative transcriptional regulator protein, GntR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWT4_9RHIZ rbh
Putative transcriptional regulator protein, GntR family {ECO:0000313|EMBL:EYR80375.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4615_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3837..4868)
DNA (1032bp) protein (344aa)
Proline racemase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXQ5_9RHIZ rbh
Proline racemase {ECO:0000313|EMBL:EYR80367.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
proline racemase rbh
SCNpilot_expt_1000_bf_scaffold_4615_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5036..5653
DNA (618bp) protein (206aa)
GntR family transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGN8_9RHIZ rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:EYR80366.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4615_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5792..6496
DNA (705bp) protein (235aa)
GntR family transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETA8_9RHIZ rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:EYR80304.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GntR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_4615_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6611..7573
DNA (963bp) protein (321aa)
Dihydrodipicolinate synthase (EC:4.2.1.52); K01714 dihydrodipicolinate synthase [EC:4.2.1.52] rbh
Dihydrodipicolinate synthase/N-acetylneuraminate lyase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBI7_9RHIZ rbh
Dihydrodipicolinate synthase/N-acetylneuraminate lyase {ECO:0000313|EMBL:EYR80305.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_4615_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7836..8873)
DNA (1038bp) protein (346aa)
Malate/L-lactate dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0E6_9RHIZ rbh
Malate/L-lactate dehydrogenase {ECO:0000313|EMBL:EYR80307.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
malate/L-lactate dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_4615_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9024..10541
DNA (1518bp) protein (506aa)
NADP-dependent fatty aldehyde dehydrogenase AldH {ECO:0000313|EMBL:EYR80308.1}; EC=1.2.1.4 {ECO:0000313|EMBL:EYR80308.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aldH; NADP-dependent fatty aldehyde dehydrogenase (EC:1.2.1.4) rbh
NADP-dependent fatty aldehyde dehydrogenase AldH n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVV8_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_4615_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10721..11530
DNA (810bp) protein (270aa)
Amino acid ABC transporter substrate binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETA4_9RHIZ rbh
Amino acid ABC transporter substrate binding protein {ECO:0000313|EMBL:EYR80309.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Periplasmic component of amino acid ABC-type transporter/signal transduction system rbh
SCNpilot_expt_1000_bf_scaffold_4615_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11946..12254
DNA (309bp) protein (103aa)
Amine acid ABC transporter, permease protein His/Glu/Gln/Arg/opine family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBI2_9RHIZ
Amine acid ABC transporter, permease protein His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EYR80310.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
SCNpilot_expt_1000_bf_scaffold_4615_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12266..12916
DNA (651bp) protein (217aa)
Putative amino acid ABC transporter permease protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRE4_9RHIZ rbh
Putative amino acid ABC transporter permease protein {ECO:0000313|EMBL:EYR80311.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gltK; amino acid ABC transporter permease rbh
SCNpilot_expt_1000_bf_scaffold_4615_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12909..13631
DNA (723bp) protein (241aa)
ABC-type polar amino acid transport system, ATPase component (EC:3.6.3.-) rbh
Glutamine transport ATP-binding protein GlnQ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0E1_9RHIZ rbh
Glutamine transport ATP-binding protein GlnQ {ECO:0000313|EMBL:EYR80312.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_4615_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13639..14889
DNA (1251bp) protein (417aa)
D-amino acid dehydrogenase small subunit {ECO:0000313|EMBL:EYR80313.1}; EC=1.4.99.1 {ECO:0000313|EMBL:EYR80313.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative D-amino acid dehydrogenase protein; K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
D-amino acid dehydrogenase small subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVV4_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_4615_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14999..15172
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ET99_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80314.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
Displaying 16 items

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