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SCNpilot_expt_1000_bf_scaffold_4814

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4814_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..1195)
DNA (1194bp) protein (398aa)
Ferredoxin-dependent glutamate synthase 1 {ECO:0000313|EMBL:EYR80498.1}; EC=1.4.7.1 {ECO:0000313|EMBL:EYR80498.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glutamate synthase; K00265 glutamate synthase (NADPH/NADH) large chain [EC:1.4.1.13 1.4.1.14]
Glutamate synthase (Ferredoxin) n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UD11_SINMW
SCNpilot_expt_1000_bf_scaffold_4814_2
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1400..2017
DNA (618bp) protein (206aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EBS3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EHJ61206.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCNpilot_expt_1000_bf_scaffold_4814_3
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2135..4042
DNA (1908bp) protein (636aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EBS3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EHJ61206.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4814_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4455..5501
DNA (1047bp) protein (349aa)
L-threonine aldolase {ECO:0000256|PIRNR:PIRNR038940}; EC=4.1.2.48 {ECO:0000256|PIRNR:PIRNR038940};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative low-specificity l-threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5] rbh
Low specificity L-threonine aldolase LtaE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CP12_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_4814_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5589..6050)
DNA (462bp) protein (154aa)
Small heat shock protein IbpA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C883_9RHIZ
Small heat shock protein IbpA {ECO:0000313|EMBL:EYR80500.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hspD; small heat shock protein HspD
SCNpilot_expt_1000_bf_scaffold_4814_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6418..7509
DNA (1092bp) protein (364aa)
Putative lysophospholipase L2 {ECO:0000313|EMBL:EYR80501.1}; EC=3.1.1.5 {ECO:0000313|EMBL:EYR80501.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
alpha/beta hydrolase fold protein; K01048 lysophospholipase [EC:3.1.1.5] rbh
Putative lysophospholipase L2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ER28_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_4814_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7515..7622)
DNA (108bp) protein (36aa)
Histidinol-phosphatase HisN {ECO:0000313|EMBL:EYR80502.1}; EC=3.1.3.15 {ECO:0000313|EMBL:EYR80502.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Histidinol-phosphatase HisN n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTJ2_9RHIZ
Displaying 7 items

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