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SCNpilot_expt_1000_bf_scaffold_4923

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4923_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..323)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A996_RHIFH
Uncharacterized protein {ECO:0000313|EMBL:EYR83513.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4923_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(418..822)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D7T1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83515.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4923_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(874..2364)
DNA (1491bp) protein (497aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glpK; glycerol kinase; K00864 glycerol kinase [EC:2.7.1.30]
Glycerol kinase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ03_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_4923_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2549..3322
DNA (774bp) protein (258aa)
D-beta-hydroxybutyrate dehydrogenase BdhA {ECO:0000313|EMBL:EYR83517.1}; EC=1.1.1.30 {ECO:0000313|EMBL:EYR83517.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
3-hydroxybutyrate dehydrogenase; K00019 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
D-beta-hydroxybutyrate dehydrogenase BdhA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CEL2_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_4923_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3362..4183
DNA (822bp) protein (274aa)
Xanthine dehydrogenase accessory protein XdhC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUI9_9RHIZ rbh
Xanthine dehydrogenase accessory protein XdhC {ECO:0000313|EMBL:EYR83518.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
xdhC; xanthine dehydrogenase accessory protein XdhC; K07402 xanthine dehydrogenase accessory factor rbh
SCNpilot_expt_1000_bf_scaffold_4923_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4180..4365)
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3I9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83519.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_4923_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4445..5359
DNA (915bp) protein (305aa)
Glycine cleavage system transcriptional activator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYU2_9RHIZ rbh
Glycine cleavage system transcriptional activator {ECO:0000313|EMBL:EYR83520.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4923_8
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5500..6723
DNA (1224bp) protein (408aa)
Arabinose efflux permease family protein n=1 Tax=Rhizobium sp. CF142 RepID=J2L5D5_9RHIZ rbh
Arabinose efflux permease family protein {ECO:0000313|EMBL:EJJ28707.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
major facilitator superfamily 1 protein
SCNpilot_expt_1000_bf_scaffold_4923_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6891..8198
DNA (1308bp) protein (436aa)
Guanine deaminase GuaD {ECO:0000313|EMBL:EYR83522.1}; EC=3.5.4.3 {ECO:0000313|EMBL:EYR83522.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Guanine deaminase GuaD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CEK9_9RHIZ rbh
guaD1; guanine deaminase rbh
SCNpilot_expt_1000_bf_scaffold_4923_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8405..8899)
DNA (495bp) protein (165aa)
Ureidoglycolate lyase {ECO:0000256|HAMAP-Rule:MF_00616, ECO:0000256|SAAS:SAAS00181913}; EC=4.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00616, ECO:0000256|SAAS:SAAS00181913};; Ureidoglycolatase {ECO:0000256|HAMAP-Rule:MF_00616}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
allA; ureidoglycolate hydrolase (EC:3.5.3.19); K01483 ureidoglycolate hydrolase [EC:3.5.3.19]
Ureidoglycolate lyase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3I4_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_4923_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8951..9094)
DNA (144bp) protein (48aa)
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase {ECO:0000313|EMBL:EYR83525.1}; EC=4.1.1.n1 {ECO:0000313|EMBL:EYR83525.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYT5_9RHIZ
OHCU decarboxylase
SCNpilot_expt_1000_bf_scaffold_4923_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9091..9462)
DNA (372bp) protein (124aa)
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase {ECO:0000313|EMBL:EYR83525.1}; EC=4.1.1.n1 {ECO:0000313|EMBL:EYR83525.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYT5_9RHIZ
OHCU decarboxylase
SCNpilot_expt_1000_bf_scaffold_4923_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9459..10391)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVZ1_9RHIZ rbh
Putative urate catabolism protein {ECO:0000313|EMBL:EYR83526.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative urate catabolism protein rbh
SCNpilot_expt_1000_bf_scaffold_4923_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10544..10921
DNA (378bp) protein (126aa)
PRC-barrel protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJT5_9RHIZ
PRC-barrel protein {ECO:0000313|EMBL:EYR83527.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4923_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10928..12106)
DNA (1179bp) protein (393aa)
Oxidoreductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZW1_9RHIZ rbh
Oxidoreductase {ECO:0000313|EMBL:EYR83528.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
oxidoreductase
SCNpilot_expt_1000_bf_scaffold_4923_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12531..12821
DNA (291bp) protein (97aa)
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC {ECO:0000313|EMBL:EYR83529.1}; EC=1.5.-.- {ECO:0000313|EMBL:EYR83529.1};; EC=2.1.1.61 {ECO:0000313|EMBL:EYR83529.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D8M3_9RHIZ
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4923_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12826..16470)
DNA (3645bp) protein (1215aa)
Sensor protein GacS {ECO:0000313|EMBL:EYR83530.1}; EC=2.7.13.3 {ECO:0000313|EMBL:EYR83530.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Sensor protein GacS n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D495_9RHIZ rbh
two component sensor kinase/response regulator hybrid
SCNpilot_expt_1000_bf_scaffold_4923_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16686..18278
DNA (1593bp) protein (531aa)
Trimethylamine methyltransferase MttB {ECO:0000313|EMBL:EYR83531.1}; EC=2.1.1.250 {ECO:0000313|EMBL:EYR83531.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K14083 trimethylamine methyltransferase [EC:2.1.1.-]
Trimethylamine methyltransferase MttB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5F004_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_4923_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18283..18666)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJS9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83532.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
Displaying 19 items

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