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SCNpilot_expt_1000_bf_scaffold_7115

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7115_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1133
DNA (1131bp) protein (377aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAAS00089752}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAAS00089759};; Folate-dependent tRNA (uracil-5-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; Folate-dependent tRNA(M-5-U54)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp
trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO (EC:2.1.1.74)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4R5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_7115_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1137..1589)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5F0F0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82422.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7115_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1668..2522)
DNA (855bp) protein (285aa)
hypothetical protein; K02291 phytoene synthase [EC:2.5.1.32] rbh
Phytoene/squalene synthetase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CKA2_9RHIZ rbh
Phytoene/squalene synthetase {ECO:0000313|EMBL:EYR82421.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_7115_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2544..2930)
DNA (387bp) protein (129aa)
Ubiquinone oxidoreductase NADH n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D099_9RHIZ
Ubiquinone oxidoreductase NADH {ECO:0000313|EMBL:EYR82420.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K09008 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7115_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2923..4755)
DNA (1833bp) protein (611aa)
Protein translocase subunit SecDF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D934_9RHIZ rbh
Protein translocase subunit SecDF {ECO:0000313|EMBL:EYR82419.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
secDF-2; preprotein translocase subunit SecDF 2
SCNpilot_expt_1000_bf_scaffold_7115_6
unknown

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4896..5435
DNA (540bp) protein (180aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7115_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5512..5850)
DNA (339bp) protein (113aa)
Putative YajC protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4R0_9RHIZ
Putative YajC protein {ECO:0000313|EMBL:EYR82418.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative YajC protein
SCNpilot_expt_1000_bf_scaffold_7115_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6033..6902
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5F0E6_9RHIZ rbh
Putative ATPase {ECO:0000313|EMBL:EYR82417.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K06923
SCNpilot_expt_1000_bf_scaffold_7115_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6951..8363)
DNA (1413bp) protein (471aa)
Lipoprotein LppB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5F0E1_9RHIZ rbh
Lipoprotein LppB {ECO:0000313|EMBL:EYR82412.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ygeR; lipoprotein YgeR
SCNpilot_expt_1000_bf_scaffold_7115_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8665..9291)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CK96_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR82411.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
bioS; biotin-regulated protein
SCNpilot_expt_1000_bf_scaffold_7115_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9548..9982)
DNA (435bp) protein (145aa)
Protein-L-isoaspartate O-methyltransferase Pcm {ECO:0000313|EMBL:EYR82410.1}; EC=2.1.1.77 {ECO:0000313|EMBL:EYR82410.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pcm; protein-L-isoaspartate O-methyltransferase; K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
Protein-L-isoaspartate O-methyltransferase Pcm n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D091_9RHIZ
Displaying 11 items

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