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SCNpilot_expt_1000_bf_scaffold_7237

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7237_1
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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58..465
DNA (408bp) protein (136aa)
Uncharacterized protein n=8 Tax=Vibrio nigripulchritudo RepID=U4DH99_9VIBR
Uncharacterized protein {ECO:0000313|EMBL:CDX36296.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7237_2
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

497..874
DNA (378bp) protein (126aa)
4-carboxymuconolactone decarboxylase {ECO:0000313|EMBL:CDX36299.1}; EC=4.1.1.44 {ECO:0000313|EMBL:CDX36299.1};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
carboxymuconolactone decarboxylase; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E62E43
SCNpilot_expt_1000_bf_scaffold_7237_3
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

871..1779
DNA (909bp) protein (303aa)
Betaine aldehyde dehydrogenase, NAD-dependent {ECO:0000313|EMBL:CDX36302.1}; EC=1.2.1.8 {ECO:0000313|EMBL:CDX36302.1};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
aldehyde dehydrogenase (EC:1.2.1.-); K00155 [EC:1.2.1.-]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037189EC
SCNpilot_expt_1000_bf_scaffold_7237_4
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1784..2365
DNA (582bp) protein (194aa)
Betaine aldehyde dehydrogenase, NAD-dependent {ECO:0000313|EMBL:CDX51192.1}; EC=1.2.1.8 {ECO:0000313|EMBL:CDX51192.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
Aldehyde Dehydrogenase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IG70_METNO
SCNpilot_expt_1000_bf_scaffold_7237_5
Pleurocapsa minor, Pleurocapsa, Pleurocapsales, Cyanobacteria, Bacteria

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2393..3895
DNA (1503bp) protein (501aa)
NAD-dependent aldehyde dehydrogenase n=1 Tax=Pleurocapsa sp. PCC 7327 RepID=K9SZL6_9CYAN rbh
NAD-dependent aldehyde dehydrogenase rbh
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:AFY75640.1}; TaxID=118163 species="Bacteria; Cyanobacteria; Pleurocapsales; Pleurocapsa.;" source="Pleurocapsa sp. PCC 7327.;"
SCNpilot_expt_1000_bf_scaffold_7237_6
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3907..4821
DNA (915bp) protein (305aa)
Gluconolactonase {ECO:0000313|EMBL:CDX36305.1}; EC=3.1.1.17 {ECO:0000313|EMBL:CDX36305.1};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
gluconolactonase; K01053 gluconolactonase [EC:3.1.1.17]
Putative gluconolactonase n=1 Tax=Rhizobium loti RepID=M5AMG2_RHILI
SCNpilot_expt_1000_bf_scaffold_7237_7
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4871..5749
DNA (879bp) protein (293aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00038215E8
Transcriptional regulator, LysR-family {ECO:0000313|EMBL:CDX36240.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_7237_8
Burkholderia sp. MR1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6080..8125
DNA (2046bp) protein (682aa)
5-oxoprolinase (ATP-hydrolyzing) {ECO:0000313|EMBL:KIG07606.1}; EC=3.5.2.9 {ECO:0000313|EMBL:KIG07606.1};; TaxID=870478 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MR1.;"
5-oxoprolinase; K01473 N-methylhydantoinase A [EC:3.5.2.14] rbh
5-oxoprolinase (ATP-hydrolyzing) n=1 Tax=Burkholderia sp. YI23 RepID=G8MP54_9BURK rbh
SCNpilot_expt_1000_bf_scaffold_7237_9
Burkholderia grimmiae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8753..9838
DNA (1086bp) protein (362aa)
5-oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14] rbh
5-oxoprolinase n=1 Tax=Cupriavidus sp. WS RepID=UPI00036CA527 rbh
5-oxoprolinase {ECO:0000313|EMBL:KDR35521.1}; TaxID=1071679 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia grimmiae.;"
SCNpilot_expt_1000_bf_scaffold_7237_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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9887..11047
DNA (1161bp) protein (387aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002E5C77F rbh
hypothetical protein rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_7237_11
bacterium YEK0313, Bacteria

Not on your lists

11044..11859
DNA (816bp) protein (272aa)
3-hydroxybutyryl-CoA dehydratase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002EDBD5C rbh
Putative enoyl-CoA hydratase echA8 {ECO:0000313|EMBL:CEJ15265.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
fadB; enoyl CoA hydratase rbh
SCNpilot_expt_1000_bf_scaffold_7237_12
Rhodobacteraceae bacterium PD-2, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11892..13049
DNA (1158bp) protein (386aa)
UPI0003D1BF03 related cluster n=1 Tax=unknown RepID=UPI0003D1BF03 rbh
Contig26, whole genome shotgun sequence {ECO:0000313|EMBL:ETA49619.1}; TaxID=1169855 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium PD-2.;"
branched chain amino acid ABC transporter periplasmic ligand-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_7237_13
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13057..13926
DNA (870bp) protein (290aa)
Putative ABC transporter, permease protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FXA5_PELBH rbh
Putative ABC transporter, permease protein {ECO:0000313|EMBL:EAU48297.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601).;"
branched chain amino acid ABC transporter inner membrane protein; K01997 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_7237_14
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14169..14948
DNA (780bp) protein (260aa)
Amino acid/amide ABC transporter membrane protein 2, HAAT family n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13LT4_BURXL
branched chain amino acid ABC transporter inner membrane protein; K01998 branched-chain amino acid transport system permease protein
Amino acid/amide ABC transporter membrane protein 2, HAAT family {ECO:0000313|EMBL:ABE34955.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
SCNpilot_expt_1000_bf_scaffold_7237_15
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14945..15721
DNA (777bp) protein (259aa)
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13LT5_BURXL
branched chain amino acid ABC transporter ATPase
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family {ECO:0000313|EMBL:ABE34954.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
SCNpilot_expt_1000_bf_scaffold_7237_16
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15708..16424
DNA (717bp) protein (239aa)
Branched chain amino acid ABC transporter ATP-binding protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FXA8_PELBH
Branched chain amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:EAU48294.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601).;"
branched chain amino acid ABC transporter ATPase
SCNpilot_expt_1000_bf_scaffold_7237_17
Herbaspirillum seropedicae, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16440..17414
DNA (975bp) protein (325aa)
NAD-dependent aldehyde dehydrogenase (EC:1.2.1.16); K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
NAD-dependent aldehyde dehydrogenase protein {ECO:0000313|EMBL:ADJ62956.1}; EC=1.2.1.16 {ECO:0000313|EMBL:ADJ62956.1};; TaxID=757424 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum seropedicae (strain SmR1).;"
NAD-dependent aldehyde dehydrogenase protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IPD6_HERSS
SCNpilot_expt_1000_bf_scaffold_7237_18
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17384..17863
DNA (480bp) protein (160aa)
aldehyde dehydrogenase (EC:1.2.1.16); K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Aldehyde dehydrogenase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WWQ1_9BRAD
Aldehyde dehydrogenase {ECO:0000313|EMBL:EAQ35590.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_expt_1000_bf_scaffold_7237_19
Streptomyces iranensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17860..18789
DNA (930bp) protein (310aa)
Citrate synthase; K01647 citrate synthase [EC:2.3.3.1]
Citrate synthase n=2 Tax=Alicycliphilus denitrificans RepID=E8TUV2_ALIDB
Citrate synthase {ECO:0000313|EMBL:CDR13207.1}; TaxID=576784 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces iranensis.;"
SCNpilot_expt_1000_bf_scaffold_7237_20
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18758..19870
DNA (1113bp) protein (371aa)
Dehydrogenase id=2898450 bin=GWF1_Rhodobacteraceae_65_7 species=Agrobacterium vitis genus=Agrobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
dehydrogenase
Tax=GWF1_Rhodobacteraceae_65_7_curated
SCNpilot_expt_1000_bf_scaffold_7237_21
Streptomyces iranensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19904..20410
DNA (507bp) protein (169aa)
LysR family transcriptional regulator, glycine cleavage system transcriptional activator n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IEH4_9SPHN
LysR family transcriptional regulator {ECO:0000313|EMBL:CDR13191.1}; TaxID=576784 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces iranensis.;"
LysR family transcriptional regulator
Displaying 21 items

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