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SCNpilot_expt_1000_bf_scaffold_7336

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7336_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..142)
DNA (141bp) protein (47aa)
ATP-dependent Clp protease adapter protein ClpS 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EWJ9_9RHIZ
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
clpS; ATP-dependent Clp protease adaptor; K06891 ATP-dependent Clp protease adaptor protein ClpS
SCNpilot_expt_1000_bf_scaffold_7336_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

301..1404
DNA (1104bp) protein (368aa)
Ribosome-binding ATPase YchF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CF74_9RHIZ
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GTP-dependent nucleic acid-binding protein engD; K06942
SCNpilot_expt_1000_bf_scaffold_7336_3
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1442..2488)
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3C7L0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUB96971.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7336_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2605..3075
DNA (471bp) protein (157aa)
Acyl dehydratase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CV84_9RHIZ
Acyl dehydratase {ECO:0000313|EMBL:EYR79000.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
MaoC-like dehydratase
SCNpilot_expt_1000_bf_scaffold_7336_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3062..3529
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D470_9RHIZ
Acyl dehydratase {ECO:0000313|EMBL:EYR78999.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
MaoC domain-containing protein dehydratase
SCNpilot_expt_1000_bf_scaffold_7336_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3665..4207)
DNA (543bp) protein (181aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
adenine phosphoribosyltransferase (EC:2.4.2.7) rbh
Adenine phosphoribosyltransferase Apt n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZH3_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_7336_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4317..5198)
DNA (882bp) protein (294aa)
ribosomal protein P2 n=1 Tax=Rhizobium giardinii RepID=UPI0003792FCA rbh
Cytochrome b/c1 {ECO:0000313|EMBL:EYR78997.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cytochrome c1; K00413 ubiquinol-cytochrome c reductase cytochrome c1 subunit
SCNpilot_expt_1000_bf_scaffold_7336_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5225..6493)
DNA (1269bp) protein (423aa)
Cytochrome b n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A719_RHIFH rbh
Cytochrome b {ECO:0000256|RuleBase:RU003385}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fbcB; cytochrome B subunit of cytochrome bc1; K00412 ubiquinol-cytochrome c reductase cytochrome b subunit rbh
SCNpilot_expt_1000_bf_scaffold_7336_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6483..7085)
DNA (603bp) protein (201aa)
Ubiquinol-cytochrome c reductase iron-sulfur subunit {ECO:0000256|RuleBase:RU004494}; EC=1.10.2.2 {ECO:0000256|RuleBase:RU004494};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit; K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2]
Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNW6_9RHIZ
SCNpilot_expt_1000_bf_scaffold_7336_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7349..9070)
DNA (1722bp) protein (574aa)
ABC transporter permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C824_9RHIZ rbh
ABC-type multidrug transport system ATPase and permease component {ECO:0000313|EMBL:EYR78994.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter permease; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_expt_1000_bf_scaffold_7336_11
R_Elusimicrobia_39_32, Elusimicrobia, Bacteria

Not on your lists

comp(9240..9551)
DNA (312bp) protein (104aa)
Plasmid stabilization system protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D953_SINAD
plasmid stabilization system protein
Tax=RIFCSPLOWO2_02_FULL_Elusimicrobia_39_32_curated
SCNpilot_expt_1000_bf_scaffold_7336_12
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9548..9820)
DNA (273bp) protein (91aa)
Addiction module antidote protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VXA4_9RHIZ
Addiction module antidote protein {ECO:0000313|EMBL:EJZ19708.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
addiction module antidote protein, CC2985 family
SCNpilot_expt_1000_bf_scaffold_7336_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9925..11778)
DNA (1854bp) protein (618aa)
Uncharacterized ABC transporter ATP-binding protein HI_1051 n=1 Tax=Rhizobium sp. RepID=L0NG67_RHISP
ABC-type multidrug transport system ATPase and permease component {ECO:0000313|EMBL:EYR78993.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter-like protein; K06147 ATP-binding cassette, subfamily B, bacterial rbh
SCNpilot_expt_1000_bf_scaffold_7336_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12125..12586
DNA (462bp) protein (154aa)
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
tRNA/rRNA methyltransferase; K03216 tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWJ6_9RHIZ
SCNpilot_expt_1000_bf_scaffold_7336_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12619..13071)
DNA (453bp) protein (151aa)
NADPH-dependent FMN reductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPA7_9RHIZ
NADPH-dependent FMN reductase {ECO:0000313|EMBL:EYR78990.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative NADPH-dependent FMN reductase
SCNpilot_expt_1000_bf_scaffold_7336_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13237..13707
DNA (471bp) protein (157aa)
Redox-sensitive transcriptional activator SoxR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C6M3_9RHIZ
Redox-sensitive transcriptional activator SoxR {ECO:0000313|EMBL:EYR78989.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
soxR; redox-sensitive transcriptional activator SoxR
SCNpilot_expt_1000_bf_scaffold_7336_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13802..14992)
DNA (1191bp) protein (397aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CME8_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78988.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K03699 putative hemolysin
SCNpilot_expt_1000_bf_scaffold_7336_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15228..15485)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPA3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78985.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7336_19
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15712..16413
DNA (702bp) protein (234aa)
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coproporphyrinogenase {ECO:0000256|HAMAP-Rule:MF_00333};; EC=1.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00333};; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
Coproporphyrinogen-III oxidase, aerobic n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U5P2_9RHIZ
hemF; coproporphyrinogen III oxidase, aerobic
Displaying 19 items

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