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SCNpilot_expt_1000_bf_scaffold_7470

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7470_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..419)
DNA (417bp) protein (139aa)
Blue-light-activated histidine kinase {ECO:0000313|EMBL:EYR84148.1}; EC=2.7.13.3 {ECO:0000313|EMBL:EYR84148.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Blue-light-activated histidine kinase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZS4_9RHIZ
signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_7470_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(941..1873)
DNA (933bp) protein (311aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043051}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043054};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
truB; tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25]
tRNA pseudouridine synthase B n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4F5_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_7470_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1886..2296)
DNA (411bp) protein (137aa)
Ribosome-binding factor A n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVH5_9RHIZ
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rbfA; ribosome-binding factor A
SCNpilot_expt_1000_bf_scaffold_7470_4
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2370..4073)
DNA (1704bp) protein (568aa)
Translation initiation factor IF-2 n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A5H2_RHIFH
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
infB; translation initiation factor IF-2; K02519 translation initiation factor IF-2
SCNpilot_expt_1000_bf_scaffold_7470_5
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

4118..4762
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Lactobacillus paracasei subsp. paracasei Lpp49 RepID=S2SFZ9_LACPA
Uncharacterized protein {ECO:0000313|EMBL:EPC89327.1}; TaxID=1256213 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp49.;"
SCNpilot_expt_1000_bf_scaffold_7470_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5079..5732)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZ73_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR84152.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K07742 hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_7470_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5808..7418)
DNA (1611bp) protein (537aa)
Transcription termination/antitermination protein NusA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D373_9RHIZ rbh
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nusA; transcription elongation factor NusA; K02600 N utilization substance protein A rbh
SCNpilot_expt_1000_bf_scaffold_7470_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7534..8148)
DNA (615bp) protein (205aa)
Ribosome maturation factor RimP n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D7N7_9RHIZ rbh
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K09748 ribosome maturation factor RimP rbh
SCNpilot_expt_1000_bf_scaffold_7470_9
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8482..9168)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Streptomyces sp. SM8 RepID=K1USX8_9ACTO
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_expt_1000_bf_scaffold_7470_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9453..10253
DNA (801bp) protein (267aa)
Putative transmembrane transport protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYV7_9RHIZ
Putative transmembrane transport protein {ECO:0000313|EMBL:EYR84155.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative transmembrane transport protein
SCNpilot_expt_1000_bf_scaffold_7470_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10323..10676)
DNA (354bp) protein (118aa)
Membrane-bound lytic murein transglycosylase B {ECO:0000313|EMBL:EYR84156.1}; EC=4.2.2.n1 {ECO:0000313|EMBL:EYR84156.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Membrane-bound lytic murein transglycosylase B n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CIT6_9RHIZ
putative lytic murein transglycosylase
SCNpilot_expt_1000_bf_scaffold_7470_12
unknown

Not on your lists

11507..11647
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7470_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11593..12198)
DNA (606bp) protein (202aa)
Recombination protein RecR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZ78_9RHIZ rbh
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
recR; recombination protein RecR; K06187 recombination protein RecR rbh
SCNpilot_expt_1000_bf_scaffold_7470_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12351..12869
DNA (519bp) protein (173aa)
MOSC domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D378_9RHIZ
MOSC domain-containing protein {ECO:0000313|EMBL:EYR84158.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
MOSC domain-containing protein
SCNpilot_expt_1000_bf_scaffold_7470_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12870..13481)
DNA (612bp) protein (204aa)
Putative amino acid efflux transmembrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D7P1_9RHIZ rbh
Putative amino acid efflux transmembrane protein {ECO:0000313|EMBL:EYR84159.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
amino acid efflux transmembrane protein
SCNpilot_expt_1000_bf_scaffold_7470_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13518..13841)
DNA (324bp) protein (108aa)
Nucleoid-associated protein SHLA_80c00100 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYW3_9RHIZ
Nucleoid-associated protein SHLA_49c000430 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K09747 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7470_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13870..15651)
DNA (1782bp) protein (594aa)
DNA polymerase III, subunits gamma and tau {ECO:0000313|EMBL:EYR84161.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EYR84161.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dnaX; DNA polymerase III subunits gamma and tau (EC:2.7.7.7); K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
DNA polymerase III subunit gamma/tau n=1 Tax=Rhizobium giardinii RepID=UPI000367105E
SCNpilot_expt_1000_bf_scaffold_7470_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16052..16462
DNA (411bp) protein (137aa)
diadenosine tetraphosphate hydrolase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000380A6CB
Diadenosine tetraphosphate hydrolase {ECO:0000313|EMBL:EYR84162.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
histidine triad (HIT) protein
SCNpilot_expt_1000_bf_scaffold_7470_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16459..17433
DNA (975bp) protein (325aa)
NUDIX hydrolase; K03426 NAD+ diphosphatase [EC:3.6.1.22] rbh
NADH pyrophosphatase NudC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EFC4_9RHIZ rbh
NTP pyrophosphohydrolase {ECO:0000313|EMBL:EYR84163.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_7470_20
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17434..17670)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NEL6_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF19241.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7470_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17754..18605)
DNA (852bp) protein (284aa)
pheA; prephenate dehydratase (EC:4.2.1.51); K04518 prephenate dehydratase [EC:4.2.1.51]
P-protein PheA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMA3_9RHIZ rbh
Prephenate dehydratase {ECO:0000313|EMBL:EYR84165.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_7470_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18620..18934)
DNA (315bp) protein (105aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
kdsB1; 3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38); K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCX1_9RHIZ
SCNpilot_expt_1000_bf_scaffold_7470_23
unknown

Not on your lists

19125..19514
DNA (390bp) protein (130aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7470_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19511..20281
DNA (771bp) protein (257aa)
Cytochrome c n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C858_9RHIZ rbh
Cytochrome c {ECO:0000313|EMBL:EYR84167.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cytochrome c class I; K08738 cytochrome c rbh
SCNpilot_expt_1000_bf_scaffold_7470_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20354..20725)
DNA (372bp) protein (124aa)
Putative permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ER00_9RHIZ
Putative permease {ECO:0000313|EMBL:EYR84168.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
auxin efflux carrier; K07088
SCNpilot_expt_1000_bf_scaffold_7470_26
unknown

Not on your lists

comp(21626..22621)
DNA (996bp) protein (332aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7470_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24789..27230
DNA (2442bp) protein (814aa)
Putative alpha-2-macroglobulin domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTG6_9RHIZ
Putative alpha-2-macroglobulin domain-containing protein {ECO:0000313|EMBL:EYR84169.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative alpha-2-macroglobulin domain-containing protein; K06894
SCNpilot_expt_1000_bf_scaffold_7470_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27242..28534
DNA (1293bp) protein (431aa)
Penicillin-binding protein 1C {ECO:0000313|EMBL:EYR84170.1}; EC=2.4.2.- {ECO:0000313|EMBL:EYR84170.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pbpC; penicillin-binding protein 1C (EC:2.4.2.-)
Penicillin-binding protein 1C n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X126_RHIFR
Displaying 28 items

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