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SCNpilot_expt_1000_bf_scaffold_7479

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Displaying 5 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7479_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..794)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003782137
Putative xylose operon repressor, ROK familiy protein {ECO:0000313|EMBL:EYR80948.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ROK family protein
SCNpilot_expt_1000_bf_scaffold_7479_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1039..2079
DNA (1041bp) protein (347aa)
D-xylose-binding periplasmic protein XylF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CAG7_9RHIZ rbh
ABC-type xylose transport system periplasmic component {ECO:0000313|EMBL:EYR80947.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
xylF; xylose binding protein transport system, XylF; K10543 D-xylose transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_7479_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2256..3569
DNA (1314bp) protein (438aa)
Xylose transport system permease protein XylH n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ESC3_9RHIZ rbh
Xylose transport system permease protein XylH {ECO:0000313|EMBL:EYR80946.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
xylH; putative permease protein, ABC transporter; K10544 D-xylose transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_7479_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3584..4369
DNA (786bp) protein (262aa)
Ribose import ATP-binding protein RbsA 1 {ECO:0000313|EMBL:EYR80945.1}; EC=3.6.3.17 {ECO:0000313|EMBL:EYR80945.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rbsA10; ribose import ATP-binding protein RbsA (EC:3.6.3.17) rbh
Ribose import ATP-binding protein RbsA 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUU6_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_7479_5
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4880..5143
DNA (264bp) protein (88aa)
Integrase family protein n=1 Tax=Methylobacterium extorquens (strain PA1) RepID=A9VWM6_METEP
Uncharacterized protein {ECO:0000313|EMBL:KGE83653.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
integrase family protein
Displaying 5 items

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