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SCNpilot_expt_1000_bf_scaffold_6198

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6198_1
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..472
DNA (471bp) protein (157aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens LBA4213 (Ach5).;"
icd; isocitrate dehydrogenase [NADP] (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) (EC:1.1.1.42)
isocitrate dehydrogenase n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI00036EFF8B
SCNpilot_expt_1000_bf_scaffold_6198_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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639..1262
DNA (624bp) protein (208aa)
gstch8; glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JFS4_AGRRK
Glutathione S-transferase protein {ECO:0000313|EMBL:ACM26764.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_6198_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1306..2160)
DNA (855bp) protein (285aa)
Transcriptional regulator, AraC family n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZRG0_RHILW rbh
AraC family transcriptional regulator; K13652 AraC family transcriptional regulator rbh
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ACI55241.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_6198_4
unknown

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comp(2400..2675)
DNA (276bp) protein (92aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6198_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3089..3688)
DNA (600bp) protein (200aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138};; NAD(P)H:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01017}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
NAD(P)H dehydrogenase (quinone) n=3 Tax=Rhizobium leguminosarum RepID=NQOR_RHIL3
wrbA; TrpR binding protein WrbA; K03809 Trp repressor binding protein
SCNpilot_expt_1000_bf_scaffold_6198_6
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3915..4688
DNA (774bp) protein (258aa)
molybdenum cofactor biosynthesis protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI0003765CFF rbh
Putative nuleotide-utilizing enzyme, moeA {ECO:0000313|EMBL:EJL54897.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
cinA1; competence-damage associated protein rbh
SCNpilot_expt_1000_bf_scaffold_6198_7
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5373..5627
DNA (255bp) protein (85aa)
universal stress protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037251A5
Putative conserved protein {ECO:0000313|EMBL:CDM57472.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6198_8
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5868..6365
DNA (498bp) protein (166aa)
Xanthine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01903, ECO:0000256|SAAS:SAAS00010603}; EC=2.4.2.22 {ECO:0000256|HAMAP-Rule:MF_01903, ECO:0000256|SAAS:SAAS00010679};; Xanthine-guanine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01903}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
xanthine-guanine phosphoribosyltransferase; K00769 xanthine phosphoribosyltransferase [EC:2.4.2.22] rbh
Xanthine phosphoribosyltransferase n=2 Tax=Rhizobium/Agrobacterium group RepID=K2QQV4_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_6198_9
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6439..7023
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Rhizobium gallicum RepID=UPI000370A92F
Uncharacterized protein {ECO:0000313|EMBL:EJC66664.1}; Flags: Precursor;; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6198_10
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7645..9873
DNA (2229bp) protein (743aa)
ribonucleotide-diphosphate reductase subunit alpha n=1 Tax=Rhizobium giardinii RepID=UPI00037D2E44
B12-dependent ribonucleoside diphosphate reductase {ECO:0000313|EMBL:AGB70931.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
B12-dependent ribonucleoside diphosphate reductase
SCNpilot_expt_1000_bf_scaffold_6198_11
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10056..11459
DNA (1404bp) protein (468aa)
Ribonucleotide-diphosphate reductase subunit alpha {ECO:0000313|EMBL:EJZ21238.1}; EC=1.17.4.1 {ECO:0000313|EMBL:EJZ21238.1};; Flags: Fragment;; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
ribonucleotide-diphosphate reductase subunit alpha; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Ribonucleotide-diphosphate reductase subunit alpha (Fragment) n=1 Tax=Rhizobium sp. Pop5 RepID=K0W298_9RHIZ
SCNpilot_expt_1000_bf_scaffold_6198_12
unknown

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11508..11666
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6198_13
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12123..12551
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037848F9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE95945.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_6198_14
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12858..13181
DNA (324bp) protein (108aa)
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JDW6_AGRRK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EJK87157.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_6198_15
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13218..13727)
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003706A72
recombination factor protein RarA; K07478 putative ATPase
AAA ATPase {ECO:0000313|EMBL:BAF88525.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
Displaying 15 items

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