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SCNpilot_expt_1000_bf_scaffold_6287

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6287_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

325..633
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CC78_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83856.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conserved membrane protein of unknown function
SCNpilot_expt_1000_bf_scaffold_6287_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

721..1278
DNA (558bp) protein (186aa)
Phage prohead protease, HK97 family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BWS8_9RHIZ rbh
Prohead peptidase {ECO:0000313|EMBL:EYR83855.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gp35; phage prohead protease; K06904
SCNpilot_expt_1000_bf_scaffold_6287_3
unknown

Not on your lists

comp(1275..1484)
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6287_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1622..2515
DNA (894bp) protein (298aa)
capsid protein n=1 Tax=Rhizobium giardinii RepID=UPI0003604AC0
Phage major capsid protein, HK97 family {ECO:0000313|EMBL:EYR83854.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phage major capsid protein HK97 family
SCNpilot_expt_1000_bf_scaffold_6287_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2781..3350
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003601E18
Phage protein PhiE125 gp8 family {ECO:0000313|EMBL:EYR81164.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6287_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3350..3682
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000374735E
Phage head-tail adaptor, putative, SPP1 family {ECO:0000313|EMBL:EYR81165.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phage head-tail adaptor
SCNpilot_expt_1000_bf_scaffold_6287_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3679..4086
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EEI6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81166.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6287_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4114..4521
DNA (408bp) protein (136aa)
Phage major tail protein, TP901-1 family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGP1_9RHIZ
Phage major tail protein, TP901-1 family {ECO:0000313|EMBL:EYR81167.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Phage major tail protein
SCNpilot_expt_1000_bf_scaffold_6287_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4521..4877
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 PF8_9RHIZ">RepID=J3BPF8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81168.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6287_10
unknown

Not on your lists

4964..5077
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6287_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5081..5620
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCT8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81170.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6287_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5944..6552
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXD9_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR81171.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6287_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7058..7405
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EF93_9RHIZ
Phage protein {ECO:0000313|EMBL:EYR81172.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6287_14
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7839..8900
DNA (1062bp) protein (354aa)
Uncharacterized protein (Fragment) n=1 Tax=Rhizobium sp. CF080 RepID=J2IHS3_9RHIZ
Gene transfer agent (GTA) orfg15, like protein {ECO:0000313|EMBL:CDN53228.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
conserved exported protein of unknown function
SCNpilot_expt_1000_bf_scaffold_6287_15
unknown

Not on your lists

comp(9654..9848)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6287_16
unknown

Not on your lists

comp(9957..10757)
DNA (801bp) protein (267aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6287_17
Cleome spinosa, Cleome, Brassicales, rosids, Streptophyta, Viridiplantae

Not on your lists

comp(10754..11407)
DNA (654bp) protein (218aa)
Prp9 n=1 Tax=Cleome spinosa RepID=B2BXP0_9ROSI
Prp9 {ECO:0000313|EMBL:ABW81077.1}; TaxID=228870 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Cleome.;" source="Cleome spinosa.;"
SCNpilot_expt_1000_bf_scaffold_6287_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11657..11863
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDV0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81175.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6287_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12215..12886
DNA (672bp) protein (224aa)
Virulence transcriptional regulatory protein PhoP n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2T2_9RHIZ rbh
Virulence transcriptional regulatory protein PhoP {ECO:0000313|EMBL:EYR81177.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rcaC; Protein rcaC rbh
SCNpilot_expt_1000_bf_scaffold_6287_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12876..14294
DNA (1419bp) protein (473aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Sensor protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY64_9RHIZ rbh
integral membrane sensor signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_6287_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14404..14835
DNA (432bp) protein (144aa)
Putative outer-membrane lipoprotein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVC5_9RHIZ
Putative outer-membrane lipoprotein {ECO:0000313|EMBL:EYR81179.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
lipa1; 17 kDa surface antigen
SCNpilot_expt_1000_bf_scaffold_6287_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14931..16070
DNA (1140bp) protein (380aa)
Cytochrome c-type biogenesis protein CycH n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDU5_9RHIZ rbh
Cytochrome c-type biogenesis protein CycH {ECO:0000313|EMBL:EYR81180.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cycH; cytochrome c-type biogenesis protein CycH; K02200 cytochrome c-type biogenesis protein CcmH rbh
SCNpilot_expt_1000_bf_scaffold_6287_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16067..16546
DNA (480bp) protein (160aa)
Cytochrome c-type biogenesis protein CcmE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTS0_9RHIZ
Cytochrome c-type biogenesis protein CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; Cytochrome c maturation protein E {ECO:0000256|HAMAP-Rule:MF_01959}; Heme chaperone CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Cytochrome c-type biogenesis protein ccmE; K02197 cytochrome c-type biogenesis protein CcmE
SCNpilot_expt_1000_bf_scaffold_6287_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16543..17250
DNA (708bp) protein (236aa)
Cytochrome c-type biogenesis protein CcmF n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q217P1_RHOPB
cytochrome c-type biogenesis protein CcmF; K02198 cytochrome c-type biogenesis protein CcmF
Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:ABD87395.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Displaying 24 items

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