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SCNpilot_expt_1000_bf_scaffold_6423

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6423_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..453)
DNA (453bp) protein (151aa)
ppx2; exopolyphosphatase (EC:3.6.1.11); K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
Ppx/GppA phosphatase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZI1_9RHIZ
Ppx/GppA phosphatase {ECO:0000313|EMBL:EYR80809.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_6423_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(464..2647)
DNA (2184bp) protein (728aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
polyphosphate kinase; K00937 polyphosphate kinase [EC:2.7.4.1]
Polyphosphate kinase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3M9G0_RHISN
SCNpilot_expt_1000_bf_scaffold_6423_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2804..3493)
DNA (690bp) protein (230aa)
ATPase involved in DNA replication initiation n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CU68_9RHIZ
ATPase involved in DNA replication initiation {ECO:0000313|EMBL:EYR80811.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ATP/GTP-binding protein
SCNpilot_expt_1000_bf_scaffold_6423_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3587..4624)
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYS5_9RHIZ
Putative permease {ECO:0000313|EMBL:EYR80812.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transporter permease protein
SCNpilot_expt_1000_bf_scaffold_6423_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4993..5199
DNA (207bp) protein (69aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
garS; phosphoribosylaminoimidazole synthetase; K01933 phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
phosphoribosylaminoimidazole synthetase n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI00036847C4
SCNpilot_expt_1000_bf_scaffold_6423_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5166..6050
DNA (885bp) protein (295aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
purM; phosphoribosylaminoimidazole synthetase; K01933 phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
Phosphoribosylformylglycinamidine cyclo-ligase n=2 Tax=Rhizobium radiobacter RepID=G6XN91_RHIRD
SCNpilot_expt_1000_bf_scaffold_6423_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6047..6709
DNA (663bp) protein (221aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Phosphoribosylglycinamide formyltransferase PurN n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ESU5_9RHIZ rbh
purN; phosphoribosylglycinamide formyltransferase
SCNpilot_expt_1000_bf_scaffold_6423_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6897..7673)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVF2_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR80816.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_6423_9
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7882..9303
DNA (1422bp) protein (474aa)
bhbA; methylmalonyl-CoA mutase; K01847 methylmalonyl-CoA mutase [EC:5.4.99.2] rbh
Methylmalonyl-CoA mutase, N-terminal domain/subunit n=1 Tax=Rhizobium sp. AP16 RepID=J2DCI4_9RHIZ rbh
Methylmalonyl-CoA mutase small subunit {ECO:0000313|EMBL:GAJ91388.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_expt_1000_bf_scaffold_6423_10
unknown

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comp(9428..10063)
DNA (636bp) protein (212aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6423_11
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10267..11757
DNA (1491bp) protein (497aa)
bhbA; methylmalonyl-CoA mutase; K01847 methylmalonyl-CoA mutase [EC:5.4.99.2]
Methylmalonyl-CoA mutase n=1 Tax=Rhizobium sp. AP16 RepID=J2WCS5_9RHIZ
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:EJK80450.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_6423_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12389..13108
DNA (720bp) protein (240aa)
Glutathione S-transferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZZ4_9RHIZ
Glutathione S-transferase {ECO:0000313|EMBL:EYR80817.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glutathione S-transferase; K07393 putative glutathione S-transferase
SCNpilot_expt_1000_bf_scaffold_6423_13
unknown

Not on your lists

13110..13463
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6423_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13545..14438)
DNA (894bp) protein (298aa)
Putative DNA ligase Lig {ECO:0000313|EMBL:EYR80818.1}; EC=6.5.1.1 {ECO:0000313|EMBL:EYR80818.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative DNA ligase Lig n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQX6_9RHIZ
ATP-dependent DNA ligase
Displaying 14 items

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