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SCNpilot_expt_1000_bf_scaffold_6436

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6436_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1464)
DNA (1464bp) protein (488aa)
prpE; propionate--CoA ligase (EC:6.2.1.17); K01908 propionyl-CoA synthetase [EC:6.2.1.17]
AMP-dependent synthetase and ligase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5T1_9RHIZ
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:EYR78846.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_6436_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1601..2260)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ENF4_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78847.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K06997 rbh
SCNpilot_expt_1000_bf_scaffold_6436_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2354..4132
DNA (1779bp) protein (593aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4]
leucyl-tRNA synthetase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037E03EC
SCNpilot_expt_1000_bf_scaffold_6436_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4105..5049
DNA (945bp) protein (315aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
leuS; leucine--tRNA ligase (EC:6.1.1.4)
Leucine--tRNA ligase n=2 Tax=Rhizobium meliloti RepID=K0P347_RHIML
Suspect SCG annotation. See neighboring gene [SCNpilot_expt_1000_bf_scaffold_6436_3].
SCNpilot_expt_1000_bf_scaffold_6436_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5036..5560
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCZ4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78849.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K03643 LPS-assembly lipoprotein
SCNpilot_expt_1000_bf_scaffold_6436_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6190..6627
DNA (438bp) protein (146aa)
holA; DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7]
DNA polymerase III, delta subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUJ7_9RHIZ
DNA polymerase III, delta subunit {ECO:0000313|EMBL:EYR78850.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_6436_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6643..7533)
DNA (891bp) protein (297aa)
Chromosome-partitioning protein ParB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXA3_9RHIZ rbh
Chromosome-partitioning protein ParB {ECO:0000313|EMBL:EYR78851.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
chromosome-partitioning protein ParB
SCNpilot_expt_1000_bf_scaffold_6436_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7557..8351)
DNA (795bp) protein (265aa)
Chromosome partitioning protein ParA n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LPD5_RHITR
Chromosome partitioning protein ParA {ECO:0000313|EMBL:EYR78852.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
chromosome partitioning protein ParA
SCNpilot_expt_1000_bf_scaffold_6436_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8364..8996)
DNA (633bp) protein (211aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.170 {ECO:0000256|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gidB; glucose inhibited division protein B; K03501 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HD06_RHIRD
SCNpilot_expt_1000_bf_scaffold_6436_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8993..10882)
DNA (1890bp) protein (630aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LSH0_RHITR
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
SCNpilot_expt_1000_bf_scaffold_6436_11
unknown

Not on your lists

comp(10860..10952)
DNA (93bp) protein (31aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6436_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10949..11158)
DNA (210bp) protein (70aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
trmE; tRNA modification GTPase TrmE; K03650 tRNA modification GTPase [EC:3.6.-.-]
tRNA modification GTPase MnmE n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MB67_RHISN
SCNpilot_expt_1000_bf_scaffold_6436_13
unknown

Not on your lists

11373..11576
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6436_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12394..13212)
DNA (819bp) protein (273aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Transcription termination factor Rho n=2 Tax=Rhizobium fredii RepID=C3MB68_RHISN
rho; transcription termination factor rho; K03628 transcription termination factor Rho
SCNpilot_expt_1000_bf_scaffold_6436_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13802..14341)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD01_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78857.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K08973 putative membrane protein
SCNpilot_expt_1000_bf_scaffold_6436_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14338..14832)
DNA (495bp) protein (165aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hemE; uroporphyrinogen decarboxylase HemE (EC:4.1.1.37)
uroporphyrinogen decarboxylase n=1 Tax=Rhizobium giardinii RepID=UPI0003806C5B
SCNpilot_expt_1000_bf_scaffold_6436_17
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14880..15374
DNA (495bp) protein (165aa)
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AB70_RHIET
Uncharacterized protein {ECO:0000313|EMBL:EGE58239.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6436_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15603..16568
DNA (966bp) protein (322aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000256|HAMAP-Rule:MF_00921};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative pyruvate, phosphate dikinase regulatory protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D017_9RHIZ rbh
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_6436_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16593..17192
DNA (600bp) protein (200aa)
Maf-like protein SHLA_225c00020 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4P4_9RHIZ rbh
Maf-like protein SHLA_30c000290 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Maf-like protein
SCNpilot_expt_1000_bf_scaffold_6436_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17185..18042
DNA (858bp) protein (286aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Shikimate dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVR6_9RHIZ rbh
aroE; shikimate 5-dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_6436_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18042..18632
DNA (591bp) protein (197aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
coaE; Dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFQ9_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_6436_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18632..19336
DNA (705bp) protein (235aa)
DNA polymerase III subunit epsilon {ECO:0000313|EMBL:EYR78863.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EYR78863.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dnaQ; DNA polymerase III subunit epsilon; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7] rbh
DNA polymerase III subunit epsilon n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EX25_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_6436_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19416..19892)
DNA (477bp) protein (159aa)
Protein-export protein SecB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D020_9RHIZ
Protein-export protein SecB {ECO:0000256|HAMAP-Rule:MF_00821}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
secB; protein-export protein SecB
SCNpilot_expt_1000_bf_scaffold_6436_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19950..20480)
DNA (531bp) protein (177aa)
Putative transmembrane FxsA-family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4P8_9RHIZ
Putative transmembrane FxsA-family protein {ECO:0000313|EMBL:EYR78865.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fxsA; FxsA; K07113 UPF0716 protein FxsA
SCNpilot_expt_1000_bf_scaffold_6436_25
unknown

Not on your lists

comp(21111..22019)
DNA (909bp) protein (303aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6436_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23024..23248
DNA (225bp) protein (75aa)
Putative HTH-type transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D024_9RHIZ
Putative HTH-type transcriptional regulator {ECO:0000313|EMBL:EYR78869.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
XRE family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_6436_27
Acetobacter sp. CAG:977, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23531..23695)
DNA (165bp) protein (55aa)
Uncharacterized protein n=1 Tax=Acetobacter sp. CAG:977 RepID=R5Q789_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCZ22174.1}; TaxID=1262685 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter; environmental samples.;" source="Acetobacter sp. CAG:977.;"
SCNpilot_expt_1000_bf_scaffold_6436_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23851..25773
DNA (1923bp) protein (641aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gyrB3; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Sinorhizobium meliloti GR4 RepID=M4IAD6_RHIML
SCNpilot_expt_1000_bf_scaffold_6436_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25829..26422)
DNA (594bp) protein (198aa)
Nitroreductase family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EWV8_9RHIZ rbh
Nitroreductase family protein {ECO:0000313|EMBL:EYR78871.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nitroreductase family protein
SCNpilot_expt_1000_bf_scaffold_6436_30
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26587..27258
DNA (672bp) protein (224aa)
Succinate-semialdehyde dehydrogenase GabD {ECO:0000313|EMBL:EYR78872.1}; EC=1.2.1.79 {ECO:0000313|EMBL:EYR78872.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
succinate-semialdehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Succinate-semialdehyde dehydrogenase GabD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZU5_9RHIZ
Displaying 30 items

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