name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_6436_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1..1464)
|
AMP-dependent synthetase and ligase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5T1_9RHIZ
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:EYR78846.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_6436_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1601..2260)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ENF4_9RHIZ
rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78847.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K06997
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_6436_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2354..4132
|
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
leucyl-tRNA synthetase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037E03EC
|
|
SCNpilot_expt_1000_bf_scaffold_6436_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4105..5049
|
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
leuS; leucine--tRNA ligase (EC:6.1.1.4)
Leucine--tRNA ligase n=2 Tax=Rhizobium meliloti RepID=K0P347_RHIML
Suspect SCG annotation. See neighboring gene [SCNpilot_expt_1000_bf_scaffold_6436_3].
|
|
SCNpilot_expt_1000_bf_scaffold_6436_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5036..5560
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCZ4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78849.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K03643 LPS-assembly lipoprotein
|
|
SCNpilot_expt_1000_bf_scaffold_6436_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6190..6627
|
holA; DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7]
DNA polymerase III, delta subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUJ7_9RHIZ
DNA polymerase III, delta subunit {ECO:0000313|EMBL:EYR78850.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_6436_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6643..7533)
|
Chromosome-partitioning protein ParB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXA3_9RHIZ
rbh
Chromosome-partitioning protein ParB {ECO:0000313|EMBL:EYR78851.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
chromosome-partitioning protein ParB
|
|
SCNpilot_expt_1000_bf_scaffold_6436_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7557..8351)
|
Chromosome partitioning protein ParA n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LPD5_RHITR
Chromosome partitioning protein ParA {ECO:0000313|EMBL:EYR78852.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
chromosome partitioning protein ParA
|
|
SCNpilot_expt_1000_bf_scaffold_6436_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8364..8996)
|
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.170 {ECO:0000256|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gidB; glucose inhibited division protein B; K03501 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HD06_RHIRD
|
|
SCNpilot_expt_1000_bf_scaffold_6436_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8993..10882)
|
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LSH0_RHITR
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
|
|
SCNpilot_expt_1000_bf_scaffold_6436_11
unknown
|
Not on your lists |
comp(10860..10952)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_6436_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10949..11158)
|
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
trmE; tRNA modification GTPase TrmE; K03650 tRNA modification GTPase [EC:3.6.-.-]
tRNA modification GTPase MnmE n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MB67_RHISN
|
|
SCNpilot_expt_1000_bf_scaffold_6436_13
unknown
|
Not on your lists |
11373..11576
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_6436_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12394..13212)
|
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Transcription termination factor Rho n=2 Tax=Rhizobium fredii RepID=C3MB68_RHISN
rho; transcription termination factor rho; K03628 transcription termination factor Rho
|
|
SCNpilot_expt_1000_bf_scaffold_6436_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13802..14341)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD01_9RHIZ
rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78857.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K08973 putative membrane protein
|
|
SCNpilot_expt_1000_bf_scaffold_6436_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14338..14832)
|
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hemE; uroporphyrinogen decarboxylase HemE (EC:4.1.1.37)
uroporphyrinogen decarboxylase n=1 Tax=Rhizobium giardinii RepID=UPI0003806C5B
|
|
SCNpilot_expt_1000_bf_scaffold_6436_17
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14880..15374
|
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AB70_RHIET
Uncharacterized protein {ECO:0000313|EMBL:EGE58239.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_6436_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15603..16568
|
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000256|HAMAP-Rule:MF_00921};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative pyruvate, phosphate dikinase regulatory protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D017_9RHIZ
rbh
hypothetical protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_6436_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16593..17192
|
Maf-like protein SHLA_225c00020 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4P4_9RHIZ
rbh
Maf-like protein SHLA_30c000290 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Maf-like protein
|
|
SCNpilot_expt_1000_bf_scaffold_6436_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17185..18042
|
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Shikimate dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVR6_9RHIZ
rbh
aroE; shikimate 5-dehydrogenase
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_6436_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18042..18632
|
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
coaE; Dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFQ9_9RHIZ
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_6436_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18632..19336
|
DNA polymerase III subunit epsilon {ECO:0000313|EMBL:EYR78863.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EYR78863.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dnaQ; DNA polymerase III subunit epsilon; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7]
rbh
DNA polymerase III subunit epsilon n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EX25_9RHIZ
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_6436_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19416..19892)
|
Protein-export protein SecB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D020_9RHIZ
Protein-export protein SecB {ECO:0000256|HAMAP-Rule:MF_00821}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
secB; protein-export protein SecB
|
|
SCNpilot_expt_1000_bf_scaffold_6436_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19950..20480)
|
Putative transmembrane FxsA-family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4P8_9RHIZ
Putative transmembrane FxsA-family protein {ECO:0000313|EMBL:EYR78865.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_6436_25
unknown
|
Not on your lists |
comp(21111..22019)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_6436_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23024..23248
|
Putative HTH-type transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D024_9RHIZ
Putative HTH-type transcriptional regulator {ECO:0000313|EMBL:EYR78869.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
XRE family transcriptional regulator
|
|
SCNpilot_expt_1000_bf_scaffold_6436_27
Acetobacter sp. CAG:977, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23531..23695)
|
Uncharacterized protein n=1 Tax=Acetobacter sp. CAG:977 RepID=R5Q789_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCZ22174.1}; TaxID=1262685 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter; environmental samples.;" source="Acetobacter sp. CAG:977.;"
|
|
SCNpilot_expt_1000_bf_scaffold_6436_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23851..25773
|
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gyrB3; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Sinorhizobium meliloti GR4 RepID=M4IAD6_RHIML
|
|
SCNpilot_expt_1000_bf_scaffold_6436_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(25829..26422)
|
Nitroreductase family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EWV8_9RHIZ
rbh
Nitroreductase family protein {ECO:0000313|EMBL:EYR78871.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nitroreductase family protein
|
|
SCNpilot_expt_1000_bf_scaffold_6436_30
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26587..27258
|
Succinate-semialdehyde dehydrogenase GabD {ECO:0000313|EMBL:EYR78872.1}; EC=1.2.1.79 {ECO:0000313|EMBL:EYR78872.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
succinate-semialdehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Succinate-semialdehyde dehydrogenase GabD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZU5_9RHIZ
|