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SCNpilot_expt_1000_bf_scaffold_6963

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6963_1
unknown

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21..275
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6963_2
unknown

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275..463
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6963_3
unknown

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comp(476..643)
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6963_4
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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673..1371
DNA (699bp) protein (233aa)
integrase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00036927EB
Integrase {ECO:0000313|EMBL:AJY46988.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
intD; phage-related integrase
SCNpilot_expt_1000_bf_scaffold_6963_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2556..2867
DNA (312bp) protein (104aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella
lipB; lipoate biosynthesis protein B; K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181]
Octanoyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ESA8_9RHIZ
SCNpilot_expt_1000_bf_scaffold_6963_6
unknown

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3192..3389
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6963_7
unknown

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comp(3408..4061)
DNA (654bp) protein (218aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6963_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4144..6096)
DNA (1953bp) protein (651aa)
acetyl-CoA carboxylase, biotin carboxylase; K01965 propionyl-CoA carboxylase alpha chain [EC:6.4.1.3]
Acetyl-CoA carboxylase, biotin carboxylase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JFJ3_AGRRK
Acetyl-CoA carboxylase, biotin carboxylase {ECO:0000313|EMBL:ACM26683.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_6963_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6173..7123)
DNA (951bp) protein (317aa)
Putative DMT family permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZC3_9RHIZ rbh
Putative DMT family permease {ECO:0000313|EMBL:EYR79871.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative DMT family permease
SCNpilot_expt_1000_bf_scaffold_6963_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7278..7682
DNA (405bp) protein (135aa)
Transcription regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUS2_9RHIZ
Transcription regulator {ECO:0000313|EMBL:EYR79870.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6963_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7951..8388
DNA (438bp) protein (146aa)
S-(hydroxymethyl)glutathione dehydrogenase {ECO:0000256|RuleBase:RU362016}; EC=1.1.1.284 {ECO:0000256|RuleBase:RU362016};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
Alcohol dehydrogenase class-3 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ESA4_9RHIZ
Displaying 11 items

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