ggKbase home page

SCNpilot_expt_1000_bf_scaffold_12940

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_12940_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..201)
DNA (201bp) protein (67aa)
Cytochrome c oxidase subunit 1 {ECO:0000313|EMBL:EYR79557.1}; EC=1.9.3.1 {ECO:0000313|EMBL:EYR79557.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ctaD; putative cytochrome C oxidase polypeptide I transmembrane protein; K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
Cytochrome c oxidase subunit 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZG9_9RHIZ
SCNpilot_expt_1000_bf_scaffold_12940_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(221..373)
DNA (153bp) protein (51aa)
Cytochrome c oxidase subunit 2 {ECO:0000256|RuleBase:RU004024}; EC=1.9.3.1 {ECO:0000256|RuleBase:RU004024};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ctaC; cytochrome c oxidase subunit 2 (EC:1.9.3.1)
Putative cytochrome c oxidase subunit 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJ29_9RHIZ
SCNpilot_expt_1000_bf_scaffold_12940_3
unknown

Not on your lists

815..1192
DNA (378bp) protein (126aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_12940_4
unknown

Not on your lists

comp(1480..1947)
DNA (468bp) protein (156aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_12940_5
Thioalkalivibrio thiocyanoxidans, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2001..2324)
DNA (324bp) protein (108aa)
PemK family protein n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DGF1_9GAMM
Growth inhibitor PemK {ECO:0000313|EMBL:AHE96983.1}; TaxID=713587 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio thiocyanoxidans ARh 4.;"
PemK family protein; Transcriptional Modulator Of MazE/xin MazF
SCNpilot_expt_1000_bf_scaffold_12940_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2321..2542)
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FUM7_RHIML
Uncharacterized protein {ECO:0000313|EMBL:AIT05294.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_12940_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2723..4129
DNA (1407bp) protein (469aa)
Protein TldD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D7Y4_9RHIZ rbh
Protein TldD {ECO:0000313|EMBL:EYR79554.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
tldD; hypothetical protein; K03568 TldD protein
SCNpilot_expt_1000_bf_scaffold_12940_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4133..5020)
DNA (888bp) protein (296aa)
Glycine cleavage system transcriptional activator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3H8_9RHIZ rbh
Glycine cleavage system transcriptional activator {ECO:0000313|EMBL:EYR79553.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_12940_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5124..5252
DNA (129bp) protein (43aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZG4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79552.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_12940_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5268..6344
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJ25_9RHIZ rbh
Putative xylanase/chitin deacetyase {ECO:0000313|EMBL:EYR79551.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
polysaccharide deacetylase
SCNpilot_expt_1000_bf_scaffold_12940_11
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6349..6603)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Enterobacter cloacae RepID=C1IUZ5_ENTCL
Uncharacterized protein {ECO:0000313|EMBL:ACO54183.1}; TaxID=550 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cloacae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_12940_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6721..7341)
DNA (621bp) protein (207aa)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pdxH; pyridoxamine 5'-phosphate oxidase; K00275 pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3H3_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_12940_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7372..7764
DNA (393bp) protein (131aa)
Acetolactate synthase, small subunit {ECO:0000313|EMBL:EYR79547.1}; EC=2.2.1.6 {ECO:0000313|EMBL:EYR79547.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZG0_9RHIZ
hypothetical protein
Displaying 13 items

View Taxonomy