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SCNpilot_expt_1000_bf_scaffold_17545

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_17545_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..468)
DNA (468bp) protein (156aa)
Beta-ketoadipyl-CoA thiolase PcaF {ECO:0000313|EMBL:EYR83644.1}; EC=2.3.1.174 {ECO:0000313|EMBL:EYR83644.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Beta-ketoadipyl-CoA thiolase PcaF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYH2_9RHIZ
pcaF; beta-ketoadipyl CoA thiolase
SCNpilot_expt_1000_bf_scaffold_17545_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(477..1166)
DNA (690bp) protein (230aa)
3-oxoadipate CoA-transferase subunit B {ECO:0000313|EMBL:EYR83643.1}; EC=2.8.3.6 {ECO:0000313|EMBL:EYR83643.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Coenzyme A transferase; K01032 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6] rbh
3-oxoadipate CoA-transferase subunit B n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CID1_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_17545_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1163..1870)
DNA (708bp) protein (236aa)
3-oxoadipate CoA-transferase subunit A {ECO:0000313|EMBL:EYR83642.1}; EC=2.8.3.6 {ECO:0000313|EMBL:EYR83642.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
3-oxoadipate CoA-transferase subunit A/beta-ketoadipate:succinyl-CoA transferase subunit A (EC:2.8.3.6); K01031 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6] rbh
3-oxoadipate CoA-transferase subunit A n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EYV2_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_17545_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2386..2775
DNA (390bp) protein (130aa)
IclR family transcriptional regulator n=1 Tax=Rhizobium giardinii RepID=UPI0003694465
Pca regulon regulatory protein PcaR {ECO:0000313|EMBL:EYR83641.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pcaR; Pca regulon regulatory protein PcaR
SCNpilot_expt_1000_bf_scaffold_17545_5
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3106..3507
DNA (402bp) protein (134aa)
Riboflavin kinase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PTV7_9RHIZ
Riboflavin biosynthesis protein RibF {ECO:0000313|EMBL:CDX11516.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
riboflavin kinase/FMN adenylyltransferase
SCNpilot_expt_1000_bf_scaffold_17545_6
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3500..4369
DNA (870bp) protein (290aa)
Catechol 1,2-dioxygenase {ECO:0000313|EMBL:CCM77271.1}; EC=1.13.11.1 {ECO:0000313|EMBL:CCM77271.1};; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
HDQ2; hydroxyquinol 1,2- dioxygenase (EC:1.13.11.37); K03381 catechol 1,2-dioxygenase [EC:1.13.11.1]
Catechol 1,2-dioxygenase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PLF3_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_17545_7
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4745..5623
DNA (879bp) protein (293aa)
Muconate cycloisomerase 1 {ECO:0000313|EMBL:CDX11520.1}; EC=5.5.1.1 {ECO:0000313|EMBL:CDX11520.1};; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
muconate and chloromuconate cycloisomerase; K01856 muconate cycloisomerase [EC:5.5.1.1]
Muconate cycloisomerase 1 n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PZL3_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_17545_8
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5635..6030
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q3J3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX11523.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
Displaying 8 items

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