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SCNPILOT_EXPT_1000_BF_Shinella_65_6

SCNPILOT_EXPT_1000_BF_Shinella_sp__DD12_65_6
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Shinella sp. DD12  →  Shinella  →  Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Description

from TS-ESOM, bin is a bit rough, added all Shinella scaffolds from ggkbase

Displaying items 51-100 of 914 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_54457
Species: Shinella sp. DD12 (100%)
3 1153 bp 61.75 2.60 97.83
SCNpilot_expt_1000_bf_scaffold_40805
Species: Shinella sp. DD12 (100%)
2 1146 bp 57.33 2.62 91.62
SCNpilot_expt_1000_bf_scaffold_44128
Species: Shinella sp. DD12 (100%)
2 1046 bp 61.95 2.63 95.79
SCNpilot_expt_1000_bf_scaffold_43461
Species: Shinella sp. DD12 (100%)
3 1614 bp 63.69 2.63 91.45
SCNpilot_expt_1000_bf_scaffold_41311
Species: Shinella sp. DD12 (50%)
2 1130 bp 65.93 2.65 100.09
SCNpilot_expt_1000_bf_scaffold_29987
Species: Shinella sp. DD12 (100%)
2 1491 bp 69.42 2.68 100.80
SCNpilot_expt_1000_bf_scaffold_41795
Species: Shinella sp. DD12 (100%)
2 1117 bp 63.92 2.69 99.91
SCNpilot_expt_1000_bf_scaffold_58481
Species: Shinella sp. DD12 (100%)
2 1111 bp 64.36 2.70 100.18
SCNpilot_expt_1000_bf_scaffold_30348
Species: Shinella sp. DD12 (66.67%)
3 1476 bp 61.72 2.71 66.46
SCNpilot_expt_1000_bf_scaffold_54431
Species: Shinella sp. DD12 (100%)
2 1106 bp 65.01 2.71 78.39
SCNpilot_expt_1000_bf_scaffold_24834
Species: Shinella sp. DD12 (50%)
4 1746 bp 60.37 2.72 92.27
SCNpilot_expt_1000_bf_scaffold_28544
Species: Shinella sp. DD12 (100%)
1 1555 bp 64.44 2.73 99.94
SCNpilot_expt_1000_bf_scaffold_39489
Species: Shinella sp. DD12 (100%)
2 1182 bp 64.72 2.75 99.75
SCNpilot_expt_1000_bf_scaffold_33543
Species: Shinella sp. DD12 (100%)
2 1357 bp 68.02 2.76 100.15
SCNpilot_expt_1000_bf_scaffold_36454
Species: Shinella sp. DD12 (100%)
2 1269 bp 67.69 2.76 99.29
SCNpilot_expt_1000_bf_scaffold_32022
Species: Shinella sp. DD12 (100%)
3 1897 bp 60.83 2.77 76.70
SCNpilot_expt_1000_bf_scaffold_33704
Species: Shinella sp. DD12 (100%)
2 1351 bp 65.43 2.78 91.71
SCNpilot_expt_1000_bf_scaffold_48282
Species: Shinella sp. DD12 (50%)
2 1440 bp 62.22 2.78 56.46
SCNpilot_expt_1000_bf_scaffold_54813
Species: Shinella sp. DD12 (100%)
2 1251 bp 59.79 2.80 51.80
SCNpilot_expt_1000_bf_scaffold_27424
Species: Shinella sp. DD12 (50%)
2 1607 bp 69.32 2.80 94.46
SCNpilot_expt_1000_bf_scaffold_78765
Species: Shinella sp. DD12 (50%)
2 1251 bp 51.72 2.80 68.11
SCNpilot_expt_1000_bf_scaffold_45602
Species: Shinella sp. DD12 (100%)
3 1428 bp 61.55 2.80 91.18
SCNpilot_expt_1000_bf_scaffold_37065
Species: Shinella sp. DD12 (100%)
2 1252 bp 64.94 2.80 96.33
SCNpilot_expt_1000_bf_scaffold_34197
Species: Shinella sp. DD12 (100%)
1 1336 bp 65.64 2.81 99.70
SCNpilot_expt_1000_bf_scaffold_66764
Species: Shinella sp. DD12 (100%)
2 1151 bp 54.82 2.82 67.25
SCNpilot_expt_1000_bf_scaffold_43446
Species: Shinella sp. DD12 (100%)
1 1065 bp 60.19 2.82 78.87
SCNpilot_expt_1000_bf_scaffold_53404
Species: Shinella sp. DD12 (75%)
4 1854 bp 54.31 2.83 78.96
SCNpilot_expt_1000_bf_scaffold_58007
Species: Shinella sp. DD12 (50%)
2 1319 bp 51.71 2.84 70.05
SCNpilot_expt_1000_bf_scaffold_69131
Species: Shinella sp. DD12 (50%)
2 1226 bp 46.25 2.85 51.39
SCNpilot_expt_1000_bf_scaffold_60228
Species: Shinella sp. DD12 (50%)
2 1223 bp 50.29 2.86 75.31
SCNpilot_expt_1000_bf_scaffold_61149
Species: Shinella sp. DD12 (100%)
2 1310 bp 57.40 2.86 51.98
SCNpilot_expt_1000_bf_scaffold_37999
Species: Shinella sp. DD12 (100%)
2 1225 bp 62.53 2.86 86.45
SCNpilot_expt_1000_bf_scaffold_36587
Species: Shinella sp. DD12 (50%)
4 2100 bp 61.05 2.86 76.57
SCNpilot_expt_1000_bf_scaffold_79116
Species: Shinella sp. DD12 (75%)
4 1740 bp 51.32 2.87 64.31
SCNpilot_expt_1000_bf_scaffold_54886
Species: Shinella sp. DD12 (100%)
3 1394 bp 60.62 2.87 64.35
SCNpilot_expt_1000_bf_scaffold_38247
Species: Shinella sp. DD12 (100%)
1 1219 bp 64.48 2.87 99.92
SCNpilot_expt_1000_bf_scaffold_44283
Species: Shinella sp. DD12 (100%)
1 1042 bp 58.73 2.88 86.08
SCNpilot_expt_1000_bf_scaffold_38401
Species: Shinella sp. DD12 (100%)
2 1215 bp 64.61 2.88 86.91
SCNpilot_expt_1000_bf_scaffold_51623
Species: Shinella sp. DD12 (100%)
2 1384 bp 55.49 2.89 73.92
SCNpilot_expt_1000_bf_scaffold_82046
Species: Shinella sp. DD12 (50%)
2 1036 bp 57.24 2.90 62.84
SCNpilot_expt_1000_bf_scaffold_30664
Species: Shinella sp. DD12 (100%)
3 1982 bp 61.76 2.90 62.51
SCNpilot_expt_1000_bf_scaffold_53878
Species: Shinella sp. DD12 (75%)
4 1208 bp 66.64 2.90 94.62
SCNpilot_expt_1000_bf_scaffold_44621
Species: Shinella sp. DD12 (50%)
2 1031 bp 59.94 2.91 91.95
SCNpilot_expt_1000_bf_scaffold_41936
Species: Shinella sp. DD12 (100%)
1 1112 bp 65.92 2.92 99.82
SCNpilot_expt_1000_bf_scaffold_38894
Species: Shinella sp. DD12 (100%)
2 1199 bp 67.06 2.92 100.08
SCNpilot_expt_1000_bf_scaffold_54701
Species: Shinella sp. DD12 (66.67%)
3 1619 bp 59.17 2.93 62.26
SCNpilot_expt_1000_bf_scaffold_46414
Species: Shinella sp. DD12 (66.67%)
3 1609 bp 56.00 2.95 55.19
SCNpilot_expt_1000_bf_scaffold_18841
Species: Shinella sp. DD12 (100%)
2 2204 bp 62.98 2.95 93.78
SCNpilot_expt_1000_bf_scaffold_45175
Species: Shinella sp. DD12 (100%)
2 1014 bp 62.92 2.96 100.30
SCNpilot_expt_1000_bf_scaffold_39488
Species: Shinella sp. DD12 (100%)
3 1182 bp 61.34 2.96 76.40
Displaying items 51-100 of 914 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.