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SCNPILOT_EXPT_1000_BF_Shinella_65_6

SCNPILOT_EXPT_1000_BF_Shinella_sp__DD12_65_6
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Shinella sp. DD12  →  Shinella  →  Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Description

from TS-ESOM, bin is a bit rough, added all Shinella scaffolds from ggkbase

Displaying items 101-150 of 914 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_27590
Species: Shinella sp. DD12 (50%)
2 1600 bp 65.31 2.97 98.81
SCNpilot_expt_1000_bf_scaffold_39946
Species: Shinella sp. DD12 (100%)
2 1683 bp 62.09 2.97 78.43
SCNpilot_expt_1000_bf_scaffold_50097
Species: Shinella sp. DD12 (100%)
3 2101 bp 64.92 2.97 77.39
SCNpilot_expt_1000_bf_scaffold_36467
Species: Shinella sp. DD12 (75%)
4 1679 bp 54.68 2.98 56.82
SCNpilot_expt_1000_bf_scaffold_48156
Species: Shinella sp. DD12 (100%)
3 1594 bp 62.48 2.98 86.01
SCNpilot_expt_1000_bf_scaffold_34067
Species: Shinella sp. DD12 (66.67%)
3 1340 bp 64.18 2.99 84.40
SCNpilot_expt_1000_bf_scaffold_34115
Species: Shinella sp. DD12 (100%)
2 1338 bp 64.72 2.99 91.48
SCNpilot_expt_1000_bf_scaffold_45456
Species: Shinella sp. DD12 (50%)
2 1005 bp 64.78 2.99 95.52
SCNpilot_expt_1000_bf_scaffold_65739
Species: Shinella sp. DD12 (100%)
2 1083 bp 55.03 3.00 79.50
SCNpilot_expt_1000_bf_scaffold_46548
Species: Shinella sp. DD12 (75%)
4 1749 bp 63.92 3.00 94.00
SCNpilot_expt_1000_bf_scaffold_52429
Species: Shinella sp. DD12 (100%)
3 1252 bp 63.82 3.00 87.22
SCNpilot_expt_1000_bf_scaffold_34287
Species: Shinella sp. DD12 (100%)
2 1333 bp 63.84 3.00 96.55
SCNpilot_expt_1000_bf_scaffold_40225
Species: Shinella sp. DD12 (100%)
1 1162 bp 64.03 3.01 99.66
SCNpilot_expt_1000_bf_scaffold_31918
Species: Shinella sp. DD12 (100%)
2 1414 bp 67.19 3.01 96.32
SCNpilot_expt_1000_bf_scaffold_29976
Species: Shinella sp. DD12 (100%)
3 1492 bp 61.13 3.02 90.88
SCNpilot_expt_1000_bf_scaffold_51476
Species: Shinella sp. DD12 (50%)
2 1489 bp 63.67 3.02 93.69
SCNpilot_expt_1000_bf_scaffold_46642
Species: Shinella sp. DD12 (100%)
2 2142 bp 59.85 3.03 67.37
SCNpilot_expt_1000_bf_scaffold_48718
Species: Shinella sp. DD12 (66.67%)
3 1402 bp 61.77 3.03 83.24
SCNpilot_expt_1000_bf_scaffold_30263
Species: Shinella sp. DD12 (100%)
3 1480 bp 66.82 3.04 95.88
SCNpilot_expt_1000_bf_scaffold_34922
Species: Shinella sp. DD12 (50%)
2 1313 bp 59.48 3.05 85.91
SCNpilot_expt_1000_bf_scaffold_66226
Species: Shinella sp. DD12 (66.67%)
3 1144 bp 66.43 3.06 103.85
SCNpilot_expt_1000_bf_scaffold_30795
Species: Shinella sp. DD12 (100%)
2 1458 bp 60.43 3.09 76.75
SCNpilot_expt_1000_bf_scaffold_21888
Species: Shinella sp. DD12 (100%)
2 1942 bp 62.56 3.09 91.61
SCNpilot_expt_1000_bf_scaffold_68874
Species: Shinella sp. DD12 (50%)
2 1132 bp 64.05 3.09 63.07
SCNpilot_expt_1000_bf_scaffold_70615
Species: Shinella sp. DD12 (100%)
2 1133 bp 60.19 3.09 66.99
SCNpilot_expt_1000_bf_scaffold_60682
Species: Shinella sp. DD12 (100%)
2 1131 bp 58.89 3.09 54.38
SCNpilot_expt_1000_bf_scaffold_45132
Species: Shinella sp. DD12 (100%)
2 1373 bp 65.62 3.10 79.10
SCNpilot_expt_1000_bf_scaffold_66836
Species: Shinella sp. DD12 (100%)
3 1130 bp 63.27 3.10 94.51
SCNpilot_expt_1000_bf_scaffold_41380
Species: Shinella sp. DD12 (100%)
1 1129 bp 64.04 3.10 99.91
SCNpilot_expt_1000_bf_scaffold_35751
Species: Shinella sp. DD12 (100%)
3 1289 bp 63.54 3.10 80.53
SCNpilot_expt_1000_bf_scaffold_64448
Species: Shinella sp. DD12 (100%)
2 1129 bp 63.77 3.10 79.45
SCNpilot_expt_1000_bf_scaffold_48671
Species: Shinella sp. DD12 (100%)
3 2012 bp 63.82 3.11 85.14
SCNpilot_expt_1000_bf_scaffold_41450
Species: Shinella sp. DD12 (100%)
1 1126 bp 61.10 3.11 52.22
SCNpilot_expt_1000_bf_scaffold_41792
Species: Shinella sp. DD12 (100%)
1 1117 bp 65.80 3.13 99.91
SCNpilot_expt_1000_bf_scaffold_41822
Species: Shinella sp. DD12 (100%)
1 1116 bp 64.43 3.14 87.90
SCNpilot_expt_1000_bf_scaffold_71938
Species: Shinella sp. DD12 (50%)
2 1113 bp 62.26 3.14 66.58
SCNpilot_expt_1000_bf_scaffold_37181
Species: Shinella sp. DD12 (75%)
4 2064 bp 59.69 3.15 88.81
SCNpilot_expt_1000_bf_scaffold_42077
Species: Shinella sp. DD12 (66.67%)
3 1108 bp 59.39 3.16 43.86
SCNpilot_expt_1000_bf_scaffold_31026
Species: Shinella sp. DD12 (100%)
3 1897 bp 62.36 3.16 89.51
SCNpilot_expt_1000_bf_scaffold_56459
Species: Shinella sp. DD12 (66.67%)
3 1260 bp 57.46 3.17 77.86
SCNpilot_expt_1000_bf_scaffold_24987
Species: Shinella sp. DD12 (100%)
2 1737 bp 65.57 3.17 96.37
SCNpilot_expt_1000_bf_scaffold_31404
Species: Shinella sp. DD12 (80%)
5 3080 bp 61.27 3.17 65.65
SCNpilot_expt_1000_bf_scaffold_29833
Species: Shinella sp. DD12 (100%)
2 1498 bp 66.22 3.17 98.73
SCNpilot_expt_1000_bf_scaffold_31862
Species: Shinella sp. DD12 (75%)
4 2672 bp 66.43 3.18 87.01
SCNpilot_expt_1000_bf_scaffold_28149
Species: Shinella sp. DD12 (100%)
2 1574 bp 55.65 3.18 74.52
SCNpilot_expt_1000_bf_scaffold_20669
Species: Shinella sp. DD12 (100%)
3 2041 bp 64.38 3.18 91.43
SCNpilot_expt_1000_bf_scaffold_36954
Species: Shinella sp. DD12 (100%)
2 1255 bp 65.58 3.19 92.27
SCNpilot_expt_1000_bf_scaffold_28306
Species: Shinella sp. DD12 (100%)
2 1567 bp 66.88 3.19 89.79
SCNpilot_expt_1000_bf_scaffold_51245
Species: Shinella sp. DD12 (66.67%)
3 1402 bp 57.13 3.21 50.29
SCNpilot_expt_1000_bf_scaffold_44209
Species: Shinella sp. DD12 (66.67%)
3 1863 bp 58.35 3.22 79.23
Displaying items 101-150 of 914 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.