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SCNpilot_expt_1000_bf_scaffold_853

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_853_1
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..535
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI000379CA70
Uncharacterized protein {ECO:0000313|EMBL:KDP71311.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_853_2
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

607..792
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A7V4_RHIFH
Uncharacterized protein {ECO:0000313|EMBL:AHK43686.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_853_3
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

973..3078
DNA (2106bp) protein (702aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036E1455 rbh
Uncharacterized protein {ECO:0000313|EMBL:KEQ02421.1}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_853_4
Azotobacter chroococcum, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3023..4192)
DNA (1170bp) protein (390aa)
Glycosyl transferase group 1 n=1 Tax=Microcystis aeruginosa PCC 9717 RepID=I4FQX5_MICAE
Uncharacterized protein {ECO:0000313|EMBL:AJE19909.1}; TaxID=1328314 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter chroococcum NCIMB 8003.;"
group 1 glycosyl transferase
SCNpilot_expt_1000_bf_scaffold_853_5
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4170..5453)
DNA (1284bp) protein (428aa)
O-antigen polymerase n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) RepID=A3PR20_RHOS1
O-antigen polymerase
O-antigen polymerase {ECO:0000313|EMBL:ABN78786.1}; TaxID=349101 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9).;"
SCNpilot_expt_1000_bf_scaffold_853_6
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5544..6455)
DNA (912bp) protein (304aa)
Glycosyl transferase n=1 Tax=Sphingobium baderi LL03 RepID=T0HDC6_9SPHN
Glycosyl transferase {ECO:0000313|EMBL:EQA97384.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
family 2 glycosyl transferase
SCNpilot_expt_1000_bf_scaffold_853_7
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6468..7274)
DNA (807bp) protein (269aa)
UDP-N-acetyl-D-mannosaminuronic acid transferase {ECO:0000313|EMBL:CCD01499.1}; EC=2.4.1.- {ECO:0000313|EMBL:CCD01499.1};; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
UDP-N-acetyl-D-mannosaminuronic acid transferase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AU90_AZOBR rbh
wecG; UDP-N-acetyl-D-mannosaminuronic acid transferase rbh
SCNpilot_expt_1000_bf_scaffold_853_8
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7271..8344)
DNA (1074bp) protein (358aa)
NAD-dependent epimerase n=1 Tax=Desulfovibrio longus RepID=UPI0003B4AF2E
Putative CDP tyvulose epimerase {ECO:0000313|EMBL:AAS83039.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
putative CDP tyvulose epimerase
SCNpilot_expt_1000_bf_scaffold_853_9
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8385..9335)
DNA (951bp) protein (317aa)
NAD-dependent epimerase/dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
NAD-dependent epimerase/dehydratase n=1 Tax=Rhizobium sp. RepID=L0NDR5_RHISP rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:CCF18457.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
SCNpilot_expt_1000_bf_scaffold_853_10
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9377..9796)
DNA (420bp) protein (140aa)
exopolysaccharide biosynthesis protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037B48DA
pss; Exopolysaccharide production protein PSS
Exopolysaccharide production protein {ECO:0000313|EMBL:ABF59715.1}; TaxID=386 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii.;"
SCNpilot_expt_1000_bf_scaffold_853_11
unknown

Not on your lists

11018..11176
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_853_12
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11305..12468)
DNA (1164bp) protein (388aa)
amidohydrolase (EC:3.5.1.32); K01451 hippurate hydrolase [EC:3.5.1.32] rbh
Amidohydrolase n=1 Tax=Rhizobium sp. CF142 RepID=J2L077_9RHIZ rbh
Amidohydrolase {ECO:0000313|EMBL:EJJ26877.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_853_13
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12629..13717
DNA (1089bp) protein (363aa)
dacF3; D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4); K01286 D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
D-alanyl-D-alanine carboxypeptidase protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AHY7_RHIET
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:KEC71597.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
SCNpilot_expt_1000_bf_scaffold_853_14
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13735..14916
DNA (1182bp) protein (394aa)
Putative cobalamin synthesis protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AHY6_RHIET rbh
Cobalamin biosynthesis CobW-like protein {ECO:0000313|EMBL:AIC29202.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
cobalamin synthesis protein P47K rbh
SCNpilot_expt_1000_bf_scaffold_853_15
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14937..15170)
DNA (234bp) protein (78aa)
hypothetical protein; K04085 tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q8A9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF61430.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
SCNpilot_expt_1000_bf_scaffold_853_16
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15167..16420)
DNA (1254bp) protein (418aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. IRBG74 RepID=U4PZC8_9RHIZ rbh
conserved exported protein of unknown function rbh
Uncharacterized protein {ECO:0000313|EMBL:CDI10435.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
SCNpilot_expt_1000_bf_scaffold_853_17
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16602..17555)
DNA (954bp) protein (318aa)
acetyl-CoA carboxylase carboxyltransferase subunit alpha; K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2]
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=ACCA_AGRRK
SCNpilot_expt_1000_bf_scaffold_853_18
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17617..18573)
DNA (957bp) protein (319aa)
tyrosine recombinase XerD n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037C8410
site-specific tyrosine recombinase XerD
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_853_19
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18573..18746)
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F595_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EHS52108.1}; Flags: Precursor;; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_853_20
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18894..19490
DNA (597bp) protein (199aa)
aroK; shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71] rbh
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
Shikimate kinase n=2 Tax=Rhizobium etli PF2_RHIE6">RepID=B3PPF2_RHIE6 rbh
SCNpilot_expt_1000_bf_scaffold_853_21
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19480..20613
DNA (1134bp) protein (378aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
aroB; 3-dehydroquinate synthase; K01735 3-dehydroquinate synthase [EC:4.2.3.4] rbh
3-dehydroquinate synthase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=AROB_AGRRK rbh
SCNpilot_expt_1000_bf_scaffold_853_22
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20610..21917
DNA (1308bp) protein (436aa)
Putative Mg2+ and Co2+ transporter CorB n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9X8L7_RHILT rbh
Putative Mg2+ and Co2+ transporter CorB {ECO:0000313|EMBL:EJB05261.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_853_23
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21981..22262)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q3Y9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCM77534.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
BolA family protein; K05527 BolA protein
SCNpilot_expt_1000_bf_scaffold_853_24
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22375..23001
DNA (627bp) protein (209aa)
Heat shock protein DnaJ domain protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F599_9RHIZ rbh
Heat shock protein DnaJ domain protein {ECO:0000313|EMBL:EHS52112.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
dnaJ; molecular chaperone DnaJ family rbh
SCNpilot_expt_1000_bf_scaffold_853_25
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23106..24092
DNA (987bp) protein (329aa)
cobs3; cobaltochelatase, CobS subunit; K09882 cobaltochelatase CobS [EC:6.6.1.2] rbh
Cobalamin biosynthesis protein n=1 Tax=Ensifer adhaerens RepID=I0FX75_ENSAD rbh
Cobalamin biosynthesis protein {ECO:0000313|EMBL:BAL73112.1}; Cobalamin biosynthesis protein CobS {ECO:0000313|EMBL:KDP70373.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_853_26
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24163..26013
DNA (1851bp) protein (617aa)
cobT; cobalamin biosynthesis protein; K09883 cobaltochelatase CobT [EC:6.6.1.2] rbh
Cobaltochelatase subunit CobT {ECO:0000313|EMBL:AGS23621.1}; EC=6.6.1.2 {ECO:0000313|EMBL:AGS23621.1};; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
Cobalamin biosynthesis protein n=2 Tax=Rhizobium etli RepID=Q2K3L8_RHIEC rbh
SCNpilot_expt_1000_bf_scaffold_853_27
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26212..27120
DNA (909bp) protein (303aa)
signal peptide protein n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI0003651926 rbh
Uncharacterized protein {ECO:0000313|EMBL:EHH02721.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
conserved exported protein of unknown function rbh
SCNpilot_expt_1000_bf_scaffold_853_28
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27131..27766)
DNA (636bp) protein (212aa)
Putative transmembrane protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q0P3_9RHIZ
Putative transmembrane protein {ECO:0000313|EMBL:CCM77527.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
transmembrane protein; K09125 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_853_29
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(27885..28184)
DNA (300bp) protein (100aa)
50S ribosomal protein L28 n=10 Tax=Rhizobium/Agrobacterium group RepID=RL28_AGRT5
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
SCNpilot_expt_1000_bf_scaffold_853_30
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28422..29201
DNA (780bp) protein (260aa)
signal peptide protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00036C1193 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACS58121.1}; Flags: Precursor;; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
Displaying items 1-30 of 42 in total

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