ggKbase home page

SCNpilot_expt_1000_bf_scaffold_975

Search features with annotation key words

Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_975_1
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..448)
DNA (447bp) protein (149aa)
metH; B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase (EC:2.1.1.13)
B12-dependent methionine synthase n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0H7G1_RHIRD
Methionine synthase {ECO:0000313|EMBL:KJF74210.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
SCNpilot_expt_1000_bf_scaffold_975_2
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

630..1892
DNA (1263bp) protein (421aa)
N-acyl-D-glucosamine 2-epimerase n=1 Tax=Rhizobium sp. AP16 RepID=J2WPR9_9RHIZ
N-acyl-D-glucosamine 2-epimerase {ECO:0000313|EMBL:EJK84245.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_975_3
unknown

Not on your lists

comp(2016..2315)
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_975_4
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2809..3192
DNA (384bp) protein (128aa)
Uncharacterized protein {ECO:0000313|EMBL:KJF66018.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
SCNpilot_expt_1000_bf_scaffold_975_5
unknown

Not on your lists

3435..3650
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_975_6
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3767..4123
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489FC3
Uncharacterized protein {ECO:0000313|EMBL:EZP66170.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_975_7
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4120..5274
DNA (1155bp) protein (385aa)
Integrase family protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EGP6_9RHIZ rbh
Integrase family protein {ECO:0000313|EMBL:CCV03308.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
integrase family protein
SCNpilot_expt_1000_bf_scaffold_975_8
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5333..5668)
DNA (336bp) protein (112aa)
UPI0003CDEBAF related cluster n=1 Tax=unknown RepID=UPI0003CDEBAF
DNA-binding protein {ECO:0000313|EMBL:ESY92819.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
XRE family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_975_9
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5859..6494)
DNA (636bp) protein (212aa)
UPI0003CF0DD5 related cluster n=1 Tax=unknown RepID=UPI0003CF0DD5
Transposase {ECO:0000313|EMBL:ESW80770.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
transposase
SCNpilot_expt_1000_bf_scaffold_975_10
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7276..7482)
DNA (207bp) protein (69aa)
DNA gyrase inhibitor YacG n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LQZ7_RHITR
DNA gyrase inhibitor YacG {ECO:0000256|HAMAP-Rule:MF_00649, ECO:0000256|SAAS:SAAS00085446}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_975_11
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7485..8105)
DNA (621bp) protein (207aa)
Maf-like protein PMI03_04741 n=1 Tax=Rhizobium sp. AP16 RepID=J2WDB1_9RHIZ rbh
Maf-like protein PMI03_04741 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
maf; Maf-like protein; K06287 septum formation protein rbh
SCNpilot_expt_1000_bf_scaffold_975_12
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8143..8361)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=4 Tax=Rhizobium/Agrobacterium group RepID=B9JB05_AGRRK
infA; translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_975_13
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8492..8959)
DNA (468bp) protein (156aa)
protein-tyrosine-phosphatase protein (EC:3.1.3.48)
Protein tyrosine phosphatase n=1 Tax=Rhizobium sp. CCGE 510 RepID=J5PTI8_9RHIZ
Protein-tyrosine-phosphatase {ECO:0000313|EMBL:EJC82486.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
SCNpilot_expt_1000_bf_scaffold_975_14
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8970..9449)
DNA (480bp) protein (160aa)
UPF0262 protein RHE_CH00582 n=2 Tax=Rhizobium etli RepID=Y582_RHIEC
hypothetical protein
UPF0262 protein REMIM1_CH00593 {ECO:0000256|HAMAP-Rule:MF_00678}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_975_15
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9453..10751)
DNA (1299bp) protein (433aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Histidinol dehydrogenase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LR02_RHITR rbh
hisD; histidinol dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_975_16
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10794..11228)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PYC4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF57735.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_975_17
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11348..12685)
DNA (1338bp) protein (446aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UBJ1_9RHIZ
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
SCNpilot_expt_1000_bf_scaffold_975_18
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13672..14607)
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000375C0EA rbh
3-keto-5-aminohexanoate cleavage protein {ECO:0000313|EMBL:KHJ54078.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_975_19
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14640..15587)
DNA (948bp) protein (316aa)
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:ESZ30092.1}; EC=1.1.1.35 {ECO:0000313|EMBL:ESZ30092.1};; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
UPI0003D01DE0 related cluster n=1 Tax=unknown RepID=UPI0003D01DE0 rbh
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_975_20
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15636..17720)
DNA (2085bp) protein (695aa)
Inner-membrane translocator n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y4P5_MESOW rbh
inner-membrane translocator rbh
Inner-membrane translocator {ECO:0000313|EMBL:AEH88448.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_975_21
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17717..19249)
DNA (1533bp) protein (511aa)
ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
Ribose import ATP-binding protein rbsA 1 n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F6W2_9RHIZ
ABC transporter family protein {ECO:0000313|EMBL:AID30500.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
SCNpilot_expt_1000_bf_scaffold_975_22
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19326..20453)
DNA (1128bp) protein (376aa)
UPI0003D0306F related cluster n=1 Tax=unknown RepID=UPI0003D0306F rbh
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KHJ54083.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
sugar ABC transporter periplasmic ligand binding protein rbh
SCNpilot_expt_1000_bf_scaffold_975_23
Rhodobacter sp. AKP1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20914..21627
DNA (714bp) protein (238aa)
Transcriptional regulator, GntR family n=1 Tax=Rhodobacter sp. AKP1 RepID=L1KAS7_9RHOB
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EKX57478.1}; TaxID=1247725 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. AKP1.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_975_24
Burkholderia jiangsuensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21683..22609)
DNA (927bp) protein (309aa)
Putative calcium-binding protein n=1 Tax=Burkholderia sp. RPE64 RepID=R4X2V5_9BURK rbh
Calcium-binding protein {ECO:0000313|EMBL:KAK42915.1}; TaxID=1458357 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia jiangsuensis.;"
putative calcium-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_975_25
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22842..23591
DNA (750bp) protein (250aa)
Cyclase family protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VLW7_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:KKC33419.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_975_26
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23740..24528
DNA (789bp) protein (263aa)
fabG; 3-ketoacyl-ACP reductase (EC:1.1.1.100) rbh
Short chain dehydrogenase n=2 Tax=Rhodobacter RepID=Q3IVE1_RHOS4 rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:CDX14578.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCNpilot_expt_1000_bf_scaffold_975_27
unknown

Not on your lists

24698..25288
DNA (591bp) protein (197aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_975_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25448..25684
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ48_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83215.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_975_29
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25802..26941)
DNA (1140bp) protein (380aa)
Methyl-accepting chemotaxis protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TVG4_9PROT
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CAM74621.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_975_30
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27252..27581)
DNA (330bp) protein (110aa)
Pectin degradation protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HHK5_9RHIZ
Pectin degradation protein {ECO:0000313|EMBL:EPE98312.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
Cupin 2 barrel domain-containing protein
Displaying items 1-30 of 63 in total

View Taxonomy