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SCNpilot_expt_1000_bf_scaffold_2002

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2002_1
unknown

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2..79
DNA (78bp) protein (26aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2002_2
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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530..2317
DNA (1788bp) protein (596aa)
Methyl-accepting chemotaxis protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QUX3_9RHIZ rbh
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EKF58987.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
mcpA; methyl-accepting chemotaxis protein rbh
SCNpilot_expt_1000_bf_scaffold_2002_3
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2444..3214)
DNA (771bp) protein (257aa)
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A8D8_STAND rbh
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase rbh
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase {ECO:0000313|EMBL:ADH88611.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_2002_4
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3238..3729)
DNA (492bp) protein (164aa)
Cupin domain protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP50_AGRRK rbh
cupin domain protein rbh
Mannose-6-phosphate isomerase {ECO:0000313|EMBL:KJF70752.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
SCNpilot_expt_1000_bf_scaffold_2002_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4005..4796
DNA (792bp) protein (264aa)
amino acid ABC transporter substrate-binding protein n=1 Tax=Rhizobium giardinii RepID=UPI00037F9D23 rbh
Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KDP71534.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
putative amino acid-binding periplasmic ABC transporter protein; K02424 cystine transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2002_6
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4893..5573
DNA (681bp) protein (227aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F3N3_9RHIZ rbh
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:EHS52659.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
inner membrane amino-acid ABC transporter permease protein; K10009 cystine transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_2002_7
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5570..6331
DNA (762bp) protein (254aa)
ABC transporter related protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F3N2_9RHIZ rbh
ABC transporter related protein {ECO:0000313|EMBL:EHS52658.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
putative amino-acid abc transporter atp-binding protein
SCNpilot_expt_1000_bf_scaffold_2002_8
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6416..7387)
DNA (972bp) protein (324aa)
2-nitropropane dioxygenase (EC:1.13.12.16) rbh
2-nitropropane dioxygenase {ECO:0000313|EMBL:AGT09789.1}; EC=1.13.12.16 {ECO:0000313|EMBL:AGT09789.1};; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
2-nitropropane dioxygenase n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XQV9_PARAH rbh
SCNpilot_expt_1000_bf_scaffold_2002_9
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7513..9654)
DNA (2142bp) protein (714aa)
Acyl-CoA synthetase n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5YE77_PARAH rbh
acyl-CoA synthetase rbh
Acyl-CoA synthetase {ECO:0000313|EMBL:AGT09788.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
SCNpilot_expt_1000_bf_scaffold_2002_10
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9756..10415)
DNA (660bp) protein (220aa)
Transcriptional regulator, TetR family n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XWU9_PARAH
transcriptional regulator, TetR family
Transcriptional regulator, TetR family {ECO:0000313|EMBL:AGT09787.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
SCNpilot_expt_1000_bf_scaffold_2002_11
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10445..11602)
DNA (1158bp) protein (386aa)
acyl-CoA dehydrogenase (EC:1.3.8.3) rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AGT09786.1}; EC=1.3.8.3 {ECO:0000313|EMBL:AGT09786.1};; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
Acyl-CoA dehydrogenase n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5YX41_PARAH rbh
SCNpilot_expt_1000_bf_scaffold_2002_12
unknown

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comp(11720..11821)
DNA (102bp) protein (34aa)

This feature has no annotations

Displaying 12 items

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