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SCNpilot_expt_1000_bf_scaffold_2009

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Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2009_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..396)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMQ0_9RHIZ
FHA domain-containing protein {ECO:0000313|EMBL:EYR83989.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative type VI secretion protein, FHA domain-containing; K11894 type VI secretion system protein ImpI
SCNpilot_expt_1000_bf_scaffold_2009_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(560..1639)
DNA (1080bp) protein (360aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00037228F1 rbh
Methyltransferase domain-containing protein {ECO:0000313|EMBL:EYR83988.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2009_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1652..1891)
DNA (240bp) protein (80aa)
PAAR repeat-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EEM6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83987.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2009_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2287..3528
DNA (1242bp) protein (414aa)
Anti-anti-sigma factor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EFR6_9RHIZ
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
btrV; anti-sigma factor antagonist btrV
SCNpilot_expt_1000_bf_scaffold_2009_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3670..4788
DNA (1119bp) protein (373aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00036C21AD
Type VI secretion ATPase, ClpV1 family {ECO:0000313|EMBL:EYR83984.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
clpB3; ATP-dependent chaperone; type VI secretion associated protein; K11907 type VI secretion system protein VasG
SCNpilot_expt_1000_bf_scaffold_2009_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4743..6395
DNA (1653bp) protein (551aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00036C21AD
Type VI secretion ATPase, ClpV1 family {ECO:0000313|EMBL:EYR83984.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
clpB3; ATP-dependent chaperone; type VI secretion associated protein; K11907 type VI secretion system protein VasG
SCNpilot_expt_1000_bf_scaffold_2009_7
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6457..6933
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPE2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KJR65020.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
hypothetical protein; K11903 type VI secretion system secreted protein Hcp
SCNpilot_expt_1000_bf_scaffold_2009_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6992..9082
DNA (2091bp) protein (697aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C8K1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83982.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2009_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9094..9705
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERG1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83981.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2009_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9859..10995
DNA (1137bp) protein (379aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTW3_9RHIZ rbh
Type VI secretion-associated protein, ImpA family {ECO:0000313|EMBL:EYR83980.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
impA-related N-terminal protein; K11902 type VI secretion system protein ImpA rbh
SCNpilot_expt_1000_bf_scaffold_2009_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11052..11561
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYG0_9RHIZ rbh
Type VI secretion protein, VC_A0107 family {ECO:0000313|EMBL:EYR83979.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11901 type VI secretion system protein ImpB
SCNpilot_expt_1000_bf_scaffold_2009_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11565..13058
DNA (1494bp) protein (498aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPE7_9RHIZ rbh
Type VI secretion protein, EvpB/VC_A0108 family {ECO:0000313|EMBL:EYR83978.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11900 type VI secretion system protein ImpC rbh
SCNpilot_expt_1000_bf_scaffold_2009_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13063..14259
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C8K7_9RHIZ
Type VI secretion protein, EvpB/VC_A0108 family {ECO:0000313|EMBL:EYR83977.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11900 type VI secretion system protein ImpC
SCNpilot_expt_1000_bf_scaffold_2009_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14273..14599
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C8K7_9RHIZ
Type VI secretion protein, EvpB/VC_A0108 family {ECO:0000313|EMBL:EYR83977.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11899 type VI secretion system protein ImpD
SCNpilot_expt_1000_bf_scaffold_2009_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14601..15056
DNA (456bp) protein (152aa)
Type VI secretion system lysozyme-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERG6_9RHIZ
Type VI secretion system lysozyme-like protein {ECO:0000313|EMBL:EYR83976.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
type VI secretion system lysozyme-like protein; K11897 type VI secretion system protein ImpF
SCNpilot_expt_1000_bf_scaffold_2009_16
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15073..15495)
DNA (423bp) protein (141aa)
response regulator n=1 Tax=Rhizobium mongolense RepID=UPI0003B44109
response regulator protein
Response regulator CheY-like domain-containing protein {ECO:0000313|EMBL:AJD45222.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
SCNpilot_expt_1000_bf_scaffold_2009_17
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15821..16123)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000365880A
Uncharacterized protein {ECO:0000313|EMBL:CDX45491.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2009_18
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16253..16876)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TL90_TISMK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK53528.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_1000_bf_scaffold_2009_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16904..17620)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRM2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78719.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
integral membrane protein
SCNpilot_expt_1000_bf_scaffold_2009_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17658..18431)
DNA (774bp) protein (258aa)
Putative transmembrane anti-sigma factor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBQ4_9RHIZ
Putative transmembrane anti-sigma factor {ECO:0000313|EMBL:EYR78720.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2009_21
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18418..18963)
DNA (546bp) protein (182aa)
RNA polymerase sigma factor n=1 Tax=Rhizobium leguminosarum RepID=UPI0003653422
EcfR {ECO:0000313|EMBL:ABO31341.1}; TaxID=386 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii.;"
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_2009_22
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19298..20224
DNA (927bp) protein (309aa)
membrane protein n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI00035D5DD9
Uncharacterized protein {ECO:0000313|EMBL:GAK72434.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
conserved membrane protein of unknown function
SCNpilot_expt_1000_bf_scaffold_2009_23
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20268..22001)
DNA (1734bp) protein (578aa)
hypothetical protein n=1 Tax=Rhizobium radiobacter RepID=UPI00035F9938 rbh
Uncharacterized protein {ECO:0000313|EMBL:EPR19607.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2009_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22008..22676)
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Rhizobium radiobacter RepID=UPI0003764B56 rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR83003.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2009_25
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22676..23722)
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Rhizobium radiobacter RepID=UPI00035DABF3 rbh
Uncharacterized protein {ECO:0000313|EMBL:EPR19624.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
phage shock protein A, PspA
SCNpilot_expt_1000_bf_scaffold_2009_26
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24068..25099
DNA (1032bp) protein (344aa)
transporter n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000369077A rbh
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEC76989.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
ribose ABC transporter substrate binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2009_27
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25187..26743
DNA (1557bp) protein (519aa)
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
ABC transporter-like protein; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17] rbh
D-ribose transporter ATP binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00035C4454 rbh
SCNpilot_expt_1000_bf_scaffold_2009_28
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27317..27751
DNA (435bp) protein (145aa)
ABC transporter permease n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI0003660287
Putative permease component of ABC transporter {ECO:0000313|EMBL:AHK46133.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
putative permease component of ABC transporter; K10440 ribose transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2009_29
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27754..28764
DNA (1011bp) protein (337aa)
Transcriptional regulator, DeoR family n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6B5K8_RHILS rbh
DeoR family transcriptional regulator rbh
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:ACS59366.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_2009_30
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28761..29756
DNA (996bp) protein (332aa)
Aldoketo reductase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JIU4_AGRRK rbh
aldoketo reductase rbh
Aldoketo reductase protein {ECO:0000313|EMBL:ACM29836.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
Displaying items 1-30 of 41 in total

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