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SCNpilot_expt_1000_bf_scaffold_2078

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2078_1
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..631
DNA (630bp) protein (210aa)
Oxidoreductase domain protein n=1 Tax=Rhizobium sp. RepID=L0NN25_RHISP
Oxidoreductase {ECO:0000313|EMBL:KEQ07268.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
oxidoreductase
SCNpilot_expt_1000_bf_scaffold_2078_2
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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645..1646
DNA (1002bp) protein (334aa)
Glycerol-3-phosphate-transporting ATPase {ECO:0000313|EMBL:EUC00783.1}; EC=3.6.3.20 {ECO:0000313|EMBL:EUC00783.1};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
ATPase component of ABC-type sugar transporter n=1 Tax=Rhizobium sp. CF080 RepID=J2HNN9_9RHIZ rbh
smoK3; ATP-binding transport protein SmoK
SCNpilot_expt_1000_bf_scaffold_2078_3
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1656..2570
DNA (915bp) protein (305aa)
ROK family protein {ECO:0000313|EMBL:CDM59361.1}; EC=2.7.1.59 {ECO:0000313|EMBL:CDM59361.1};; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
N-acetylglucosamine kinase n=1 Tax=Rhizobium leguminosarum RepID=UPI000360B6AD
ROK family protein rbh
SCNpilot_expt_1000_bf_scaffold_2078_4
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2563..3288
DNA (726bp) protein (242aa)
CutC family protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V359_9RHIZ
CutC family protein {ECO:0000313|EMBL:ENN87531.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
copper homeostasis protein CutC
SCNpilot_expt_1000_bf_scaffold_2078_5
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3298..4899)
DNA (1602bp) protein (534aa)
Sensor histidine kinase n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1D8_AGRVS rbh
sensor histidine kinase rbh
Sensor histidine kinase {ECO:0000313|EMBL:ACM38686.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_2078_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5300..6265
DNA (966bp) protein (322aa)
magnesium transporter n=1 Tax=Rhizobium giardinii RepID=UPI00035F5AD2
Magnesium transporter {ECO:0000313|EMBL:AHF83987.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
Mg2+/Co2+ transporter
SCNpilot_expt_1000_bf_scaffold_2078_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6294..6917)
DNA (624bp) protein (208aa)
Integral membrane protein, YjbE family n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9N7F1_RHILT
Integral membrane protein, YjbE family {ECO:0000313|EMBL:EJB02622.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
integral membrane protein TerC
SCNpilot_expt_1000_bf_scaffold_2078_8
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7404..10550)
DNA (3147bp) protein (1049aa)
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter n=1 Tax=Rhizobium sp. CF080 RepID=J2TFC8_9RHIZ rbh
Transporter {ECO:0000313|EMBL:KGE00704.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
mexF; AcrB/AcrD/AcrF family rbh
SCNpilot_expt_1000_bf_scaffold_2078_9
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10668..11852)
DNA (1185bp) protein (395aa)
RND family efflux transporter, MFP subunit n=1 Tax=Rhizobium sp. CF080 RepID=J2KVP8_9RHIZ rbh
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EUB96240.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
RND family efflux transporter MFP subunit
SCNpilot_expt_1000_bf_scaffold_2078_10
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11910..12707)
DNA (798bp) protein (266aa)
lipase esterase; K01567 [EC:3.-.-.-] rbh
Esterase/lipase n=1 Tax=Rhizobium sp. CF080 RepID=J3CRJ7_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EUB96239.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
SCNpilot_expt_1000_bf_scaffold_2078_11
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12847..13803
DNA (957bp) protein (319aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF080 RepID=J2KA02_9RHIZ rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EUB96238.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2078_12
unknown

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13937..14317
DNA (381bp) protein (127aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2078_13
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14407..14907
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037595B3
Uncharacterized protein {ECO:0000313|EMBL:CDX20287.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein; K09796 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2078_14
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15147..15677
DNA (531bp) protein (177aa)
Nuclear export factor GLE1 n=2 Tax=Rhizobium meliloti RepID=F6BYM6_SINMB
nuclear export factor GLE1
Nuclear export factor GLE1 {ECO:0000313|EMBL:AEG07287.1}; Flags: Precursor;; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
SCNpilot_expt_1000_bf_scaffold_2078_15
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15738..17342
DNA (1605bp) protein (535aa)
UPI0003CFC6DE related cluster n=1 Tax=unknown RepID=UPI0003CFC6DE
Copper resistance protein C {ECO:0000313|EMBL:ESZ24421.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
copper resistance protein CopC; K14166 copper transport protein
SCNpilot_expt_1000_bf_scaffold_2078_16
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17483..18637
DNA (1155bp) protein (385aa)
Dehydrogenase n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K0R8_AGRVS rbh
dehydrogenase rbh
Dehydrogenase {ECO:0000313|EMBL:ACM38466.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_2078_17
Photobacterium leiognathi, Photobacterium, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18660..19622)
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003612F38
Epimerase {ECO:0000313|EMBL:KJF99322.1}; TaxID=553611 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium.;" source="Photobacterium leiognathi.;"
NAD-dependent epimerase/dehydratase
SCNpilot_expt_1000_bf_scaffold_2078_18
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19941..20438
DNA (498bp) protein (166aa)
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; EC=2.1.1.63 {ECO:0000256|HAMAP-Rule:MF_00772};; 6-O-methylguanine-DNA methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; O-6-methylguanine-DNA-alkyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
methylated-DNA--protein-cysteine methyltransferase (EC:2.1.1.63); K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Sphingomonas wittichii RepID=UPI0002D37787
SCNpilot_expt_1000_bf_scaffold_2078_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20648..20977
DNA (330bp) protein (110aa)
Amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPL7_9RHIZ
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A {ECO:0000313|EMBL:EYR82866.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Displaying 19 items

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