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SCNpilot_expt_1000_bf_scaffold_2151

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2151_1
CG_Gallio_02, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..702
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AEQ5_9PROT
hypothetical protein
Tax=CG_Gallio_02
SCNpilot_expt_1000_bf_scaffold_2151_2
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(734..1525)
DNA (792bp) protein (264aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
trpC; indole-3-glycerol phosphate synthase (EC:4.1.1.48); K01609 indole-3-glycerol phosphate synthase [EC:4.1.1.48]
indole-3-glycerol-phosphate synthase n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI00035C9055
SCNpilot_expt_1000_bf_scaffold_2151_3
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1531..2547)
DNA (1017bp) protein (339aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18); K00766 anthranilate phosphoribosyltransferase [EC:2.4.2.18] rbh
Anthranilate phosphoribosyltransferase n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XPM7_RHIRD rbh
SCNpilot_expt_1000_bf_scaffold_2151_4
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2567..2713)
DNA (147bp) protein (49aa)
ppiD1; peptidyl prolyl cis-trans isomerase D signal peptide protein (EC:5.2.1.8); K03770 peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037BB093
Folding chaperone domain-containing protein {ECO:0000313|EMBL:AGS21967.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_2151_5
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2749..3216)
DNA (468bp) protein (156aa)
Peptidyl prolyl cis-trans isomerase D signal peptide protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LJ12_RHITR
peptidyl prolyl cis-trans isomerase D signal peptide protein
Peptidyl prolyl cis-trans isomerase D signal peptide protein {ECO:0000313|EMBL:AGB71227.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_2151_6
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3356..4399)
DNA (1044bp) protein (348aa)
Peptidyl-prolyl cis-trans isomerase D {ECO:0000313|EMBL:CDM58084.1}; EC=5.2.1.8 {ECO:0000313|EMBL:CDM58084.1};; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
ppiD1; peptidyl-prolyl cis-trans isomerase D signal peptide protein (EC:5.2.1.8); K03770 peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI0003686E35
SCNpilot_expt_1000_bf_scaffold_2151_7
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4607..4873
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF122 RepID=J2J087_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDM58085.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2151_8
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5007..5642
DNA (636bp) protein (212aa)
Protein ExoD n=8 Tax=Rhizobium meliloti RepID=EXOD_RHIME rbh
Exopolysaccharide synthesis ExoD rbh
Protein exoD {ECO:0000313|EMBL:CDH87695.1}; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
SCNpilot_expt_1000_bf_scaffold_2151_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5753..6472
DNA (720bp) protein (240aa)
nuclease n=1 Tax=Rhizobium radiobacter RepID=UPI000381B6B6
Nuclease {ECO:0000313|EMBL:KDR90853.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
conserved exported protein of unknown function
SCNpilot_expt_1000_bf_scaffold_2151_10
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6559..7791)
DNA (1233bp) protein (411aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2ILP6_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EUC00216.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2151_11
unknown

Not on your lists

comp(8023..8136)
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2151_12
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8440..9366)
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000374E3D5 rbh
DMT superfamily inner membrane transporter protein {ECO:0000313|EMBL:AJD43990.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2151_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9594..10226
DNA (633bp) protein (211aa)
Transacetylase n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XWC3_RHIRD rbh
Transacetylase {ECO:0000313|EMBL:EHH05408.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
transacetylase rbh
SCNpilot_expt_1000_bf_scaffold_2151_14
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10362..10667
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NCW0_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF18905.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2151_15
Mesorhizobium sp. L103C119B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10822..11886)
DNA (1065bp) protein (355aa)
UPI0003CFB03A related cluster n=1 Tax=unknown RepID=UPI0003CFB03A rbh
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:ESZ68103.1}; TaxID=1287085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C119B0.;"
ABC transporter-like protein rbh
SCNpilot_expt_1000_bf_scaffold_2151_16
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11957..12682)
DNA (726bp) protein (242aa)
oxidoreductase n=1 Tax=Rhizobium gallicum RepID=UPI0003733D5C rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EHK76289.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_expt_1000_bf_scaffold_2151_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12795..14294)
DNA (1500bp) protein (500aa)
ABC transporter substrate-binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00038079B2 rbh
Extracellular solute-binding protein {ECO:0000313|EMBL:EMS95644.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2151_18
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14388..15215)
DNA (828bp) protein (276aa)
ABC transporter permease n=1 Tax=Rhizobium leguminosarum RepID=UPI000379AF0A rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EHK76291.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
binding-protein-dependent transport system inner membrane protein; K02026 multiple sugar transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_2151_19
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15217..16104)
DNA (888bp) protein (296aa)
ABC transporter permease n=1 Tax=Rhizobium gallicum RepID=UPI00035C5CAD rbh
ABC transporter permease {ECO:0000313|EMBL:AHF87494.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
binding-protein-dependent transport system inner membrane protein; K02025 multiple sugar transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_2151_20
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16318..17556)
DNA (1239bp) protein (413aa)
Glycerol-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361217}; EC=1.1.5.3 {ECO:0000256|RuleBase:RU361217};; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
glpD; glycerol-3-phosphate dehydrogenase; K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
Glycerol-3-phosphate dehydrogenase n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0G325_RHIML
SCNpilot_expt_1000_bf_scaffold_2151_21
unknown

Not on your lists

17996..18415
DNA (420bp) protein (140aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2151_22
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18667..20022)
DNA (1356bp) protein (452aa)
3-dehydroquinate synthase n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UD01_SINMW rbh
3-dehydroquinate synthase rbh
3-dehydroquinate synthase {ECO:0000313|EMBL:ABR61531.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_2151_23
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20110..21126
DNA (1017bp) protein (339aa)
hypothetical protein n=1 Tax=Rhizobium RepID=UPI00035F9A63 rbh
DeoR family transcriptional regulator rbh
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:ABR61532.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_2151_24
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21247..22758
DNA (1512bp) protein (504aa)
carbohydrate kinase FGGY; K00854 xylulokinase [EC:2.7.1.17] rbh
hypothetical protein n=1 Tax=Rhizobium gallicum RepID=UPI000371335D rbh
Xylulokinase {ECO:0000313|EMBL:AHF87489.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
SCNpilot_expt_1000_bf_scaffold_2151_25
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22813..23856)
DNA (1044bp) protein (348aa)
Putative D-xylulose reductase {ECO:0000313|EMBL:CDM61428.1}; EC=1.1.1.9 {ECO:0000313|EMBL:CDM61428.1};; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
putative D-xylulose reductase (EC:1.1.1.9); K05351 D-xylulose reductase [EC:1.1.1.9] rbh
Theronine dehydrogenase-like Zn-dependent dehydrogenase n=1 Tax=Rhizobium sp. CF122 RepID=J2ICL8_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_2151_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24036..24350)
DNA (315bp) protein (105aa)
plasmid stabilization protein n=1 Tax=Aureimonas ureilytica RepID=UPI00037A96EE
Uncharacterized protein {ECO:0000313|EMBL:EYR80977.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2151_27
unknown

Not on your lists

comp(24412..24666)
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2151_28
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24816..25241
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UZR5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN87105.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2151_29
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25252..26382)
DNA (1131bp) protein (377aa)
tgt; queuine tRNA-ribosyltransferase; K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29] rbh
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
Queuine tRNA-ribosyltransferase n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JWX1_AGRVS rbh
SCNpilot_expt_1000_bf_scaffold_2151_30
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26382..27464)
DNA (1083bp) protein (361aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] rbh
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Rhizobium sp. CF080 RepID=J3BVA6_9RHIZ rbh
Displaying items 1-30 of 44 in total

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