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SCNpilot_expt_1000_bf_scaffold_2325

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2325_1
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

75..437
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000371E88D
Uncharacterized protein {ECO:0000313|EMBL:GAK69009.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2325_2
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

438..941
DNA (504bp) protein (168aa)
allA; ureidoglycolate hydrolase (EC:3.5.3.19)
Ureidoglycolate lyase {ECO:0000256|HAMAP-Rule:MF_00616, ECO:0000256|SAAS:SAAS00181913}; EC=4.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00616, ECO:0000256|SAAS:SAAS00181913};; Ureidoglycolatase {ECO:0000256|HAMAP-Rule:MF_00616}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
Ureidoglycolate lyase n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5SLH7_RHIET
SCNpilot_expt_1000_bf_scaffold_2325_3
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

938..1294
DNA (357bp) protein (119aa)
5-hydroxyisourate hydrolase {ECO:0000256|RuleBase:RU361270}; Short=HIU hydrolase {ECO:0000256|RuleBase:RU361270};; Short=HIUHase {ECO:0000256|RuleBase:RU361270};; EC=3.5.2.17 {ECO:0000256|RuleBase:RU361270};; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
transthyretin-like protein; K07127 5-hydroxyisourate hydrolase [EC:3.5.2.17]
5-hydroxyisourate hydrolase n=2 Tax=Agrobacterium RepID=F0L994_AGRSH
SCNpilot_expt_1000_bf_scaffold_2325_4
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1364..2503)
DNA (1140bp) protein (380aa)
Lactate dehydrogenase {ECO:0000313|EMBL:KDP76237.1}; EC=1.1.2.3 {ECO:0000313|EMBL:KDP76237.1};; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
lldD; L-lactate dehydrogenase (EC:1.1.2.3)
L-lactate dehydrogenase n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0H7X1_RHIRD rbh
SCNpilot_expt_1000_bf_scaffold_2325_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2597..3919)
DNA (1323bp) protein (441aa)
guanine deaminase; K01487 guanine deaminase [EC:3.5.4.3]
Putative guanine deaminase {ECO:0000313|EMBL:CAK09066.1}; EC=3.5.4.3 {ECO:0000313|EMBL:CAK09066.1};; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
Putative guanine deaminase n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1MDB1_RHIL3 rbh
SCNpilot_expt_1000_bf_scaffold_2325_6
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3916..5154)
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MG78_RHISN rbh
Uncharacterized protein {ECO:0000313|EMBL:AHK45123.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2325_7
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5277..6179)
DNA (903bp) protein (301aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF142 RepID=J1T357_9RHIZ rbh
Transcriptional regulator {ECO:0000313|EMBL:EJJ26041.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
gcvA-1; glycine-cleavage system transcriptional activator GcvA 1
SCNpilot_expt_1000_bf_scaffold_2325_8
unknown

Not on your lists

6296..6493
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2325_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6490..7197)
DNA (708bp) protein (236aa)
XdhC protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003726C95 rbh
Strain MEJ076 contig_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ02831.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
xdhC; xanthine dehydrogenase accessory protein XdhC rbh
SCNpilot_expt_1000_bf_scaffold_2325_10
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7409..9748)
DNA (2340bp) protein (780aa)
Xanthine dehydrogenase protein, B subunit n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UCY3_9RHIZ rbh
Xanthine dehydrogenase protein, B subunit {ECO:0000313|EMBL:ENN88013.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
xdhB1; xanthine dehydrogenase, molybdopterin binding subunit rbh
SCNpilot_expt_1000_bf_scaffold_2325_11
unknown

Not on your lists

comp(9748..9960)
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2325_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9957..10418)
DNA (462bp) protein (154aa)
xdhA; xanthine dehydrogenase (EC:1.17.1.4); K13481 xanthine dehydrogenase small subunit [EC:1.17.1.4]
Xanthine dehydrogenase, small subunit n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9NH71_RHILT
Xanthine dehydrogenase, small subunit {ECO:0000313|EMBL:EJB07304.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
SCNpilot_expt_1000_bf_scaffold_2325_13
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10466..11404)
DNA (939bp) protein (313aa)
xdhA; xanthine dehydrogenase; K13481 xanthine dehydrogenase small subunit [EC:1.17.1.4]
Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding protein subunit A n=1 Tax=Rhizobium freirei PRF 81 RepID=N6VAE0_9RHIZ
Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding protein subunit A {ECO:0000313|EMBL:ENN88012.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_expt_1000_bf_scaffold_2325_14
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11438..12217)
DNA (780bp) protein (260aa)
3-hydroxybutyrate dehydrogenase; K00019 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
cytochrome C biogenesis protein CcmE n=1 Tax=Rhizobium leguminosarum RepID=UPI000371A286
Cytochrome C biogenesis protein CcmE {ECO:0000313|EMBL:AHF85102.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
SCNpilot_expt_1000_bf_scaffold_2325_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12442..13935
DNA (1494bp) protein (498aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glycerol kinase; K00864 glycerol kinase [EC:2.7.1.30] rbh
Glycerol kinase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ03_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2325_16
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14249..14536)
DNA (288bp) protein (96aa)
Conserved hypothetical exported protein n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1MDC2_RHIL3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KJF74776.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
SCNpilot_expt_1000_bf_scaffold_2325_17
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14791..15165
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VLI4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJZ19791.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
YciI-related domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2325_18
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15162..16418
DNA (1257bp) protein (419aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Rhizobium sp. CF122 RepID=J3BSC7_9RHIZ rbh
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EJL57181.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
RNA polymerase sigma factor protein (sigma-70); K03088 RNA polymerase sigma-70 factor, ECF subfamily rbh
SCNpilot_expt_1000_bf_scaffold_2325_19
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16563..17621
DNA (1059bp) protein (353aa)
luciferase n=1 Tax=Rhizobium leguminosarum RepID=UPI000371BF3F rbh
monooxygenase rbh
Luciferase-like monooxygenase {ECO:0000313|EMBL:ACI56124.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_2325_20
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17650..18399
DNA (750bp) protein (250aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
methionine aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18]
Methionine aminopeptidase n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UB48_RHIRD rbh
SCNpilot_expt_1000_bf_scaffold_2325_21
unknown

Not on your lists

comp(18705..18947)
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2325_22
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19498..19656
DNA (159bp) protein (53aa)
Arabinose efflux permease family protein n=1 Tax=Rhizobium sp. CF142 RepID=J1SLF6_9RHIZ
Arabinose efflux permease family protein {ECO:0000313|EMBL:EJJ26023.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
transmembrane MFS permease
SCNpilot_expt_1000_bf_scaffold_2325_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19767..21587
DNA (1821bp) protein (607aa)
Chemoreceptor McpA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5A3_9RHIZ
Chemoreceptor McpA {ECO:0000313|EMBL:EYR83722.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mcpV; chemoreceptor methyl-accepting chemotaxis transmembrane protein rbh
SCNpilot_expt_1000_bf_scaffold_2325_24
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21798..23072
DNA (1275bp) protein (425aa)
microcin B17 transporter n=1 Tax=Rhizobium mongolense RepID=UPI0003B60E8D rbh
ABC transporter SbmA/BacA-like protein {ECO:0000313|EMBL:AJD42062.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
transporter
SCNpilot_expt_1000_bf_scaffold_2325_25
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23328..24323)
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J2ARW0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ26020.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2325_26
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24455..25051
DNA (597bp) protein (199aa)
Putative membrane protein n=1 Tax=Rhizobium sp. CF142 RepID=J2KZ51_9RHIZ
Putative membrane protein {ECO:0000313|EMBL:EJJ26019.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
nitrate reductase
SCNpilot_expt_1000_bf_scaffold_2325_27
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25139..25810
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF122 RepID=J2J821_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL57193.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2325_28
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26011..27435
DNA (1425bp) protein (475aa)
GTPase Der n=1 Tax=Rhizobium sp. CF080 RepID=J3CF21_9RHIZ rbh
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
engA; GTP-binding protein EngA; K03977 GTP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2325_29
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27547..27807
DNA (261bp) protein (87aa)
amino acid transporter n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037750D4
Amino acid transporter {ECO:0000313|EMBL:ESX78564.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
lysine exporter protein LysE/YggA
SCNpilot_expt_1000_bf_scaffold_2325_30
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27768..28178
DNA (411bp) protein (137aa)
Amino acid transporter n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FID9_9RHIZ
Amino acid transporter {ECO:0000313|EMBL:ESX78564.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
hypothetical protein
Displaying items 1-30 of 31 in total

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