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SCNpilot_expt_1000_bf_scaffold_2482

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2482_1
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..130)
DNA (129bp) protein (43aa)
Cysteine desulfurase n=2 Tax=Rhizobium tropici RepID=L0LIR3_RHITR
cysteine desulfurase
Cysteine desulfurase {ECO:0000313|EMBL:AGB71313.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_2482_2
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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320..997
DNA (678bp) protein (226aa)
alpha/beta hydrolase n=1 Tax=Rhizobium giardinii RepID=UPI0003780377 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHK44436.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hypothetical protein; K07018 rbh
SCNpilot_expt_1000_bf_scaffold_2482_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1117..1374
DNA (258bp) protein (86aa)
Putative transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0W307_RHILT
Putative transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain {ECO:0000313|EMBL:EJC80116.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
CopG/Arc/MetJ family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2482_4
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1652..2746)
DNA (1095bp) protein (365aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
anmK; anhydro-N-acetylmuramic acid kinase AnmK (EC:2.7.1.170) rbh
Anhydro-N-acetylmuramic acid kinase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PWT1_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2482_5
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2887..4140
DNA (1254bp) protein (418aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
tyrS; tyrosyl-tRNA synthetase (EC:6.1.1.1); K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1] rbh
tyrosyl-tRNA synthetase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00036F0B21 rbh
SCNpilot_expt_1000_bf_scaffold_2482_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4421..7816)
DNA (3396bp) protein (1132aa)
membrane protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037BCEA3 rbh
transmembrane protein rbh
Putative transmembrane protein {ECO:0000313|EMBL:CAK08078.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_2482_7
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7941..8411
DNA (471bp) protein (157aa)
thiol peroxidase, peroxiredoxin; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=2 Tax=Methylobacterium extorquens RepID=H1KHD2_METEX
Bacterioferritin comigratory protein {ECO:0000313|EMBL:AHK44441.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_expt_1000_bf_scaffold_2482_8
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8408..9253
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3CTR5_9RHIZ rbh
Rhamnosyltransferase {ECO:0000313|EMBL:KGE00500.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2482_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9369..10649
DNA (1281bp) protein (427aa)
Metalloendopeptidase-like membrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDH1_9RHIZ rbh
Metalloendopeptidase-like membrane protein {ECO:0000313|EMBL:EYR79836.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transmembrane peptidase rbh
SCNpilot_expt_1000_bf_scaffold_2482_10
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11026..12342
DNA (1317bp) protein (439aa)
rhlE; ATP-dependent RNA helicase (EC:3.6.1.-)
DNA/RNA helicase, superfamily II n=1 Tax=Rhizobium sp. CF080 RepID=J2TIJ6_9RHIZ
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:EUB95661.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
SCNpilot_expt_1000_bf_scaffold_2482_11
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12342..12614
DNA (273bp) protein (91aa)
NUDIX hydrolase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F6D8_9RHIZ
NUDIX hydrolase {ECO:0000313|EMBL:EHS51677.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hydrolase
Displaying 11 items

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