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SCNpilot_expt_1000_bf_scaffold_2532

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2532_1
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(95..679)
DNA (585bp) protein (195aa)
Transcriptional regulatory protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89PU4_BRADU
AraC family transcriptional regulator {ECO:0000313|EMBL:KJC40426.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2532_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1016..1669)
DNA (654bp) protein (218aa)
MerR family transcriptional regulator n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI0003788E5F rbh
transcriptional regulator rbh
MerR family transcriptional regulator {ECO:0000313|EMBL:AHK03630.1}; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens LBA4213 (Ach5).;"
SCNpilot_expt_1000_bf_scaffold_2532_3
bacterium YEK0313, Bacteria

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comp(1804..2631)
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Oligella urethralis RepID=UPI00038266A2
2-oxoglutaramate amidase {ECO:0000313|EMBL:CEJ10198.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
amidohydrolase
SCNpilot_expt_1000_bf_scaffold_2532_4
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2797..4125)
DNA (1329bp) protein (443aa)
glutamate synthase n=1 Tax=Rhizobium mongolense RepID=UPI0003B79C05
ferredoxin-dependent glutamate synthase
Ferredoxin-dependent glutamate synthase {ECO:0000313|EMBL:ACS59618.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_2532_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4142..4828)
DNA (687bp) protein (229aa)
Glutamate synthase family protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VXP4_RHILT rbh
Glutamate synthase family protein {ECO:0000313|EMBL:EJC78176.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
glxC; formyl-methanofuran dehydrogenase domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_2532_6
Ochrobactrum sp. SJY1, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4855..5760)
DNA (906bp) protein (302aa)
amidophosphoribosyltransferase (EC:2.4.2.14) rbh
glutamine amidotransferase n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI0003770497 rbh
Glutamine amidotransferase protein {ECO:0000313|EMBL:AIH15828.1}; TaxID=1526653 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. SJY1.;"
SCNpilot_expt_1000_bf_scaffold_2532_7
unknown

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6083..6298
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2532_8
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6497..7924)
DNA (1428bp) protein (476aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] rbh
NAD-dependent aldehyde dehydrogenase n=1 Tax=Rhizobium sp. AP16 RepID=J2WBE7_9RHIZ
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:EJK79945.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_2532_9
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7972..9129)
DNA (1158bp) protein (386aa)
sarcosine oxidase subunit beta family protein; K00303 sarcosine oxidase, subunit beta [EC:1.5.3.1]
Sarcosine oxidase subunit beta family protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAR3_9SPHN rbh
Sarcosine oxidase subunit beta family protein {ECO:0000313|EMBL:EGD58300.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_expt_1000_bf_scaffold_2532_10
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9126..10592)
DNA (1467bp) protein (489aa)
glycine cleavage T protein (aminomethyl transferase); K00302 sarcosine oxidase, subunit alpha [EC:1.5.3.1]
Sarcosine oxidase, subunit alpha n=1 Tax=Pseudomonas putida CSV86 RepID=L1M0Y6_PSEPU rbh
Sarcosine oxidase, subunit alpha {ECO:0000313|EMBL:EKX84661.1}; TaxID=1005395 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida CSV86.;"
SCNpilot_expt_1000_bf_scaffold_2532_11
unknown

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comp(10618..10830)
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2532_12
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11110..12129
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Pseudomonas putida S11 RepID=J8V402_PSEPU
Uncharacterized protein {ECO:0000313|EMBL:EJT84519.1}; TaxID=1218169 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida S11.;"
hypothetical protein
Displaying 12 items

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