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SCNpilot_expt_1000_bf_scaffold_2580

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2580_1
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..308
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003601C6D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAK10077.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_2580_2
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

398..2875
DNA (2478bp) protein (826aa)
Beta-mannosidase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UZ80_9RHIZ rbh
Beta-mannosidase {ECO:0000313|EMBL:ENN84142.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
beta-mannosidase protein rbh
SCNpilot_expt_1000_bf_scaffold_2580_3
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3053..3526)
DNA (474bp) protein (158aa)
Membrane protein involved in the export of O-antigen and teichoic acid n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=J0H4W3_RHILT
Transmembrane teichuronic acid biosynthesis protein {ECO:0000313|EMBL:EJZ20956.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
polysaccharide biosynthesis protein
SCNpilot_expt_1000_bf_scaffold_2580_4
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4309..4857)
DNA (549bp) protein (183aa)
Lysophospholipase n=1 Tax=Rhizobium sp. AP16 RepID=J2WLK8_9RHIZ
Lysophospholipase {ECO:0000313|EMBL:EJK83793.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
putative transmembrane teichuronic acid biosynthesis protein
SCNpilot_expt_1000_bf_scaffold_2580_5
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4886..6403)
DNA (1518bp) protein (506aa)
Membrane protein involved in the export of O-antigen and teichoic acid n=1 Tax=Rhizobium sp. AP16 RepID=J2DLH1_9RHIZ rbh
Membrane protein involved in the export of O-antigen and teichoic acid {ECO:0000313|EMBL:EJK83792.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
putative transmembrane teichuronic acid biosynthesis protein
SCNpilot_expt_1000_bf_scaffold_2580_6
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6603..7781)
DNA (1179bp) protein (393aa)
Cellobiosyl-diphosphoprenyl alpha-mannosyltransferase protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LRV6_RHITR
cellobiosyl-diphosphoprenyl alpha-mannosyltransferase protein
Cellobiosyl-diphosphoprenyl alpha-mannosyltransferase protein {ECO:0000313|EMBL:AGB72855.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_2580_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8717..9046
DNA (330bp) protein (110aa)
glutamine amidotransferase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037333A5
glxB; putative glutamine amidotransferase protein
Glutamate synthase family protein {ECO:0000313|EMBL:EJC70928.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
SCNpilot_expt_1000_bf_scaffold_2580_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9103..9789
DNA (687bp) protein (229aa)
protein glxC n=1 Tax=Rhizobium leguminosarum RepID=UPI000379D212
glxC; putative glutamate synthase subunit
Protein glxC {ECO:0000313|EMBL:AHF87696.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
SCNpilot_expt_1000_bf_scaffold_2580_9
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9799..11121
DNA (1323bp) protein (441aa)
Glutamate synthase family protein n=1 Tax=Rhizobium sp. CF142 RepID=J1T991_9RHIZ rbh
Glutamate synthase family protein {ECO:0000313|EMBL:EJJ28311.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
glxD; glutamate synthase family protein
SCNpilot_expt_1000_bf_scaffold_2580_10
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11285..12592
DNA (1308bp) protein (436aa)
Glutamine synthetase, type III n=1 Tax=Rhizobium sp. CF142 RepID=J2AXR7_9RHIZ
Glutamine synthetase, type III {ECO:0000313|EMBL:EJJ28310.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
glnT; glutamine synthetase, type III
SCNpilot_expt_1000_bf_scaffold_2580_11
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12555..13118)
DNA (564bp) protein (188aa)
Uncharacterized protein {ECO:0000313|EMBL:CDX51622.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCNpilot_expt_1000_bf_scaffold_2580_12
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13347..13601
DNA (255bp) protein (85aa)
Formyltetrahydrofolate deformylase {ECO:0000256|HAMAP-Rule:MF_01927}; EC=3.5.1.10 {ECO:0000256|HAMAP-Rule:MF_01927};; Formyl-FH(4) hydrolase {ECO:0000256|HAMAP-Rule:MF_01927}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
purUa; formyltetrahydrofolate deformylase (EC:3.5.1.10); K01433 formyltetrahydrofolate deformylase [EC:3.5.1.10]
formyltetrahydrofolate deformylase n=1 Tax=Rhizobium giardinii RepID=UPI000380917A
SCNpilot_expt_1000_bf_scaffold_2580_13
unknown

Not on your lists

13917..14435
DNA (519bp) protein (173aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2580_14
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14782..16014
DNA (1233bp) protein (411aa)
3-methyl-2-oxobutanoate dehydrogenase; K00166 2-oxoisovalerate dehydrogenase E1 component, alpha subunit [EC:1.2.4.4] rbh
2-oxoisovalerate dehydrogenase subunit alpha n=1 Tax=Ochrobactrum anthropi RepID=UPI000289F07E rbh
2-oxoisovalerate dehydrogenase {ECO:0000313|EMBL:EXL06134.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
SCNpilot_expt_1000_bf_scaffold_2580_15
Brucella sp. BO2, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16027..17031
DNA (1005bp) protein (335aa)
2-oxoisovalerate dehydrogenase, E1 component subunit beta; K00167 2-oxoisovalerate dehydrogenase E1 component, beta subunit [EC:1.2.4.4] rbh
2-oxoisovalerate dehydrogenase, E1 component, beta subunit n=16 Tax=Brucella ovis RepID=A5VUI6_BRUO2 rbh
2-oxoisovalerate dehydrogenase subunit beta {ECO:0000313|EMBL:EFM60658.1}; TaxID=693750 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. BO2.;"
SCNpilot_expt_1000_bf_scaffold_2580_16
Brucella suis, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17034..18287
DNA (1254bp) protein (418aa)
branched-chain alpha-keto acid dehydrogenase subunit E2; K09699 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] rbh
Dihydrolipoamide acetyltransferase n=50 Tax=Brucella RepID=C7LI14_BRUMC rbh
Uncharacterized protein {ECO:0000313|EMBL:ENR19615.1}; TaxID=1160233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella suis 92/29.;"
SCNpilot_expt_1000_bf_scaffold_2580_17
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18291..19685
DNA (1395bp) protein (465aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1337887 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium 229E.;"
dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
Dihydrolipoyl dehydrogenase n=2 Tax=Ochrobactrum intermedium RepID=C4WQI2_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_2580_18
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19775..20995
DNA (1221bp) protein (407aa)
chromosome partitioning protein ParA n=1 Tax=Rhizobium leguminosarum RepID=UPI0003677E51 rbh
Plasmid partitioning protein RepA {ECO:0000313|EMBL:EJJ31582.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
Replication protein A rbh
SCNpilot_expt_1000_bf_scaffold_2580_19
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21085..22095
DNA (1011bp) protein (337aa)
Replication protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UH86_RHIRD rbh
Replication protein {ECO:0000313|EMBL:EGP53955.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
Replication protein rbh
SCNpilot_expt_1000_bf_scaffold_2580_20
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(22304..22927)
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Methylocystis parvus RepID=UPI0002F668F5
transcriptional regulator TetR
Transcriptional regulator protein TetR {ECO:0000313|EMBL:CCJ07410.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_expt_1000_bf_scaffold_2580_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23086..26517
DNA (3432bp) protein (1144aa)
acylglycerophosphoethanolamine acyltransferase (EC:6.2.1.20); K05939 acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20] rbh
Bifunctional protein Aas n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDC0_9RHIZ rbh
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:EYR82964.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_2580_22
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26620..27090)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3C9V2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUB97391.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2580_23
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27783..28175
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B703DD
Putative uncharacterized protein {ECO:0000313|EMBL:EHK73726.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2580_24
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28196..28783)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036B5DE0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDN94074.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_expt_1000_bf_scaffold_2580_25
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(28844..30031)
DNA (1188bp) protein (396aa)
gcdH; glutaryl-CoA dehydrogenase; K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7] rbh
Glutaryl-CoA dehydrogenase n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CGL8_AGRT5 rbh
Glutaryl-CoA dehydrogenase {ECO:0000313|EMBL:CDN55530.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
SCNpilot_expt_1000_bf_scaffold_2580_26
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30124..31020
DNA (897bp) protein (299aa)
LysR family transcriptional regulator n=2 Tax=Ochrobactrum intermedium RepID=C4WI92_9RHIZ rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:EEQ95737.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_2580_27
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31063..31845)
DNA (783bp) protein (261aa)
3-ketoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:EJT03966.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EJT03966.1};; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
fabG; 3-ketoacyl-ACP reductase (EC:1.1.1.100)
3-ketoacyl-ACP reductase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003774D63 rbh
SCNpilot_expt_1000_bf_scaffold_2580_28
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31927..32736
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000379E9BB rbh
Uncharacterized protein {ECO:0000313|EMBL:KEC71458.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2580_29
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32743..32901)
DNA (159bp) protein (53aa)
Putative import inner membrane translocase protein, TIM family n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V4G7_9RHIZ
Putative import inner membrane translocase protein, TIM family {ECO:0000313|EMBL:ENN88780.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
import inner membrane translocase subunit Tim44
Displaying 29 items

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