ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2620

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2620_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1093
DNA (1092bp) protein (364aa)
putative nicotinate phosphoribosyltransferase; K00763 nicotinate phosphoribosyltransferase [EC:2.4.2.11] rbh
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EV88_9RHIZ rbh
Nicotinic acid phosphoribosyltransferase {ECO:0000313|EMBL:EYR84125.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_2620_2
unknown

Not on your lists

comp(1153..1494)
DNA (342bp) protein (114aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2620_3
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1623..2885)
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8B1A8_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EMS96831.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2620_4
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2991..3617)
DNA (627bp) protein (209aa)
Ribonuclease D (EC:3.1.26.3); K03684 ribonuclease D [EC:3.1.13.5]
Ribonuclease D n=2 Tax=Agrobacterium RepID=F0LED4_AGRSH
Ribonuclease D {ECO:0000313|EMBL:ADY67205.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCNpilot_expt_1000_bf_scaffold_2620_5
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3715..4443)
DNA (729bp) protein (243aa)
Transcriptional regulator n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V151_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:ENN86741.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
NanR family transcriptional reguator
SCNpilot_expt_1000_bf_scaffold_2620_6
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4696..5958)
DNA (1263bp) protein (421aa)
amino acid ABC transporter substrate-binding protein n=1 Tax=Rhizobium loti RepID=UPI00036FEF9E rbh
Receptor ligand binding region family protein {ECO:0000313|EMBL:AID28531.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
amino acid ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2620_7
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5998..6432)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FQQ4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX82978.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2620_8
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6432..7487)
DNA (1056bp) protein (352aa)
UPI0003CE06A3 related cluster n=1 Tax=unknown RepID=UPI0003CE06A3 rbh
Aldo/keto reductase {ECO:0000313|EMBL:ESW87544.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2620_9
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7492..7842)
DNA (351bp) protein (117aa)
UPI0003CE129A related cluster n=1 Tax=unknown RepID=UPI0003CE129A
Uncharacterized protein {ECO:0000313|EMBL:ESW87545.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2620_10
Mesorhizobium sp. L2C067A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7865..8647)
DNA (783bp) protein (261aa)
GntR family transcriptional regulator n=1 Tax=Mesorhizobium sp. L2C089B000 RepID=V7H911_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:ESZ34746.1}; TaxID=1287106 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C067A000.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2620_11
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8756..9577
DNA (822bp) protein (274aa)
UPI0003CDE6D3 related cluster n=1 Tax=unknown RepID=UPI0003CDE6D3
Branched-chain amino acid ABC transporter ATPase {ECO:0000313|EMBL:ESW87548.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2620_12
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9723..10304
DNA (582bp) protein (194aa)
UPI0003CF9AAA related cluster n=1 Tax=unknown RepID=UPI0003CF9AAA
ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_expt_1000_bf_scaffold_2620_13
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10301..11209
DNA (909bp) protein (303aa)
UPI0003CE60C1 related cluster n=1 Tax=unknown RepID=UPI0003CE60C1
ABC transporter permease {ECO:0000313|EMBL:ESW87550.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
branched-chain amino acid ABC-type transport system, permease component
SCNpilot_expt_1000_bf_scaffold_2620_14
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11209..12210
DNA (1002bp) protein (334aa)
ABC transporter permease n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D71C19 rbh
ABC transporter permease {ECO:0000313|EMBL:KGM35600.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_2620_15
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12237..13724
DNA (1488bp) protein (496aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q1I8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF57559.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2620_16
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13907..14974
DNA (1068bp) protein (356aa)
Aspartate aminotransferase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LLF0_RHITR
aspartate aminotransferase
Aspartate aminotransferase {ECO:0000313|EMBL:AGB72213.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Displaying 16 items

View Taxonomy