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SCNpilot_expt_1000_bf_scaffold_2633

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2633_1
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(58..237)
DNA (180bp) protein (60aa)
Laccase domain protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XBF5_RHIFR
laccase domain-containing protein
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_expt_1000_bf_scaffold_2633_2
unknown

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446..877
DNA (432bp) protein (144aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2633_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(968..2068)
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VWK4_RHILT
Uncharacterized protein {ECO:0000313|EMBL:EJC77223.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2633_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2082..2882)
DNA (801bp) protein (267aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
lgt; Prolipoprotein diacylglyceryl transferase (EC:2.4.99.-) rbh
Prolipoprotein diacylglyceryl transferase n=1 Tax=Rhizobium sp. IRBG74 RepID=U4PZA0_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_2633_5
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3113..3373
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UCN1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN87908.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2633_6
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3775..4275
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI0003696369 rbh
Uncharacterized protein {ECO:0000313|EMBL:KGE01076.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2633_7
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4278..5099
DNA (822bp) protein (274aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Pyrroline-5-carboxylate reductase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LKZ0_RHITR
proC; pyrroline-5-carboxylate reductase
SCNpilot_expt_1000_bf_scaffold_2633_8
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5110..5451
DNA (342bp) protein (114aa)
tRNA-binding protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00037408D3
Protein csaA {ECO:0000313|EMBL:CCM76632.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
csaA; chaperone protein
SCNpilot_expt_1000_bf_scaffold_2633_9
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5494..6075)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2JI14_9RHIZ
PF07081 family protein {ECO:0000313|EMBL:CDN54833.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2633_10
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6156..7265)
DNA (1110bp) protein (370aa)
glucokinase (EC:2.7.1.2) rbh
Glucokinase {ECO:0000313|EMBL:AAQ87154.1}; EC=2.7.1.2 {ECO:0000313|EMBL:AAQ87154.1};; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
Glucokinase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=Q6W264_RHISN rbh
SCNpilot_expt_1000_bf_scaffold_2633_11
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7443..8240
DNA (798bp) protein (266aa)
Trehalose 6-phosphate phosphatase {ECO:0000256|RuleBase:RU361117}; EC=3.1.3.12 {ECO:0000256|RuleBase:RU361117};; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
HAD-superfamily hydrolase (EC:3.1.3.12); K01087 trehalose 6-phosphate phosphatase [EC:3.1.3.12] rbh
haloacid dehalogenase n=1 Tax=Rhizobium phaseoli RepID=UPI0002DFCB66 rbh
SCNpilot_expt_1000_bf_scaffold_2633_12
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8252..9631)
DNA (1380bp) protein (460aa)
two-component sensor histidine kinase (EC:2.7.13.3); K07638 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
Probable two-component sensor histidine kinase protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PUY9_RHIE6 rbh
SCNpilot_expt_1000_bf_scaffold_2633_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9662..10009)
DNA (348bp) protein (116aa)
Two-component response regulator protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9J776_AGRRK
two-component response regulator protein; K07659 two-component system, OmpR family, phosphate regulon response regulator OmpR
Two-component response regulator protein {ECO:0000313|EMBL:ACM27183.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_2633_14
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10363..10539)
DNA (177bp) protein (59aa)
MarR family transcriptional regulator n=2 Tax=Rhizobium RepID=UPI0003664AFA
Transcriptional regulator {ECO:0000313|EMBL:EJJ25911.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
MarR family transcriptional regulator
Displaying 14 items

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