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SCNpilot_expt_1000_bf_scaffold_2661

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2661_1
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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55..597
DNA (543bp) protein (181aa)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:AIC29166.1}; EC=2.4.2.8 {ECO:0000313|EMBL:AIC29166.1};; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
hpt; hypoxanthine phosphoribosyltransferase (EC:2.4.2.8); K00760 hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] rbh
Hypoxanthine phosphoribosyltransferase n=2 Tax=Rhizobium leguminosarum RepID=C6AXI2_RHILS rbh
SCNpilot_expt_1000_bf_scaffold_2661_2
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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625..1083
DNA (459bp) protein (153aa)
MFS transporter n=1 Tax=Rhizobium mongolense RepID=UPI0003B47664
Response regulator receiver protein {ECO:0000313|EMBL:CCM77510.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
two-component response regulator protein
SCNpilot_expt_1000_bf_scaffold_2661_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1224..3866)
DNA (2643bp) protein (881aa)
membrane protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000382D5B3 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACI56835.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_2661_4
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4027..5295)
DNA (1269bp) protein (423aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
diaminopimelate decarboxylase; K01586 diaminopimelate decarboxylase [EC:4.1.1.20]
diaminopimelate decarboxylase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000382DB4F rbh
SCNpilot_expt_1000_bf_scaffold_2661_5
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5308..5538)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3BPW2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGD87706.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2661_6
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5578..6981)
DNA (1404bp) protein (468aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
argH; argininosuccinate lyase ArgH (EC:4.3.2.1)
Argininosuccinate lyase 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGD7_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2661_7
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7006..7668
DNA (663bp) protein (221aa)
Thiol-disulfide isomerase-like thioredoxin n=1 Tax=Rhizobium sp. CF142 RepID=J2KWQ5_9RHIZ rbh
Thiol:disulfide interchange protein TlpA {ECO:0000313|EMBL:AJD43016.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
tlpA; thiol:disulfide interchange protein rbh
SCNpilot_expt_1000_bf_scaffold_2661_8
Pseudomonas cichorii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7697..8314
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00035D37A4
Glutathione S-transferase {ECO:0000313|EMBL:AHF68637.1}; TaxID=1441629 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas cichorii JBC1.;"
glutathione S-transferase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2661_9
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8470..9342)
DNA (873bp) protein (291aa)
hbdA; 3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157); K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0W6V2_RHILT
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:EJC81501.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
SCNpilot_expt_1000_bf_scaffold_2661_10
Ochrobactrum sp. SJY1, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9493..9600)
DNA (108bp) protein (36aa)
electron transfer flavoprotein subunit beta n=1 Tax=Rhizobium giardinii RepID=UPI00036F74AD
Electron transfer flavoprotein alpha subunit {ECO:0000313|EMBL:AIH15767.1}; TaxID=1526653 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. SJY1.;"
etfA-2; electron-transport flavoprotein subunit alpha 2
Displaying 10 items

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