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SCNpilot_expt_1000_bf_scaffold_2820

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2820_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..802
DNA (801bp) protein (267aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
lysS; lysyl-tRNA synthetase (EC:6.1.1.6); K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6]
lysyl-tRNA synthetase n=1 Tax=Rhizobium giardinii RepID=UPI00037D937D
SCNpilot_expt_1000_bf_scaffold_2820_2
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1118..2428)
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q596_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF58894.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2820_3
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3636..4415
DNA (780bp) protein (260aa)
Chelated iron transport system membrane protein yfeB n=1 Tax=Rhizobium sp. RepID=L0NHG8_RHISP
Chelated iron transport system membrane protein yfeB {ECO:0000313|EMBL:CCF20558.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
yfeB; Chelated iron transport system membrane protein YfeB
SCNpilot_expt_1000_bf_scaffold_2820_4
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4399..5256
DNA (858bp) protein (286aa)
Chelated iron transport system membrane protein yfeC n=1 Tax=Rhizobium sp. RepID=L0NI49_RHISP rbh
Membrane protein {ECO:0000313|EMBL:KGD91953.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
yfeC; Chelated iron transport system membrane protein YfeC rbh
SCNpilot_expt_1000_bf_scaffold_2820_5
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5253..6101
DNA (849bp) protein (283aa)
ABC transporter, membrane spanning protein (Iron transport) n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UEY0_RHIRD
Manganese ABC transporter permease protein {ECO:0000313|EMBL:GAK68696.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
iron ABC transporter, membrane spanning protein; K11606 manganese/iron transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2820_6
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6156..7583)
DNA (1428bp) protein (476aa)
gamma-aminobutyraldehyde dehydrogenase; K00137 aminobutyraldehyde dehydrogenase [EC:1.2.1.19] rbh
gamma-aminobutyraldehyde dehydrogenase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00035FA521 rbh
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:EJL48576.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
SCNpilot_expt_1000_bf_scaffold_2820_7
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7710..9446)
DNA (1737bp) protein (579aa)
spermidine/putrescine ABC transporter permease n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000376D6A8
Inner membrane ABC transporter permease protein {ECO:0000313|EMBL:CDM59336.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
ABC transporter, permease protein
SCNpilot_expt_1000_bf_scaffold_2820_8
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9443..10435)
DNA (993bp) protein (331aa)
ABC transporter n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HPE5_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM59334.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
ABC transporter ATP-binding protein; K02052 putative spermidine/putrescine transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2820_9
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10667..11827)
DNA (1161bp) protein (387aa)
Spermidine/putrescine ABC transporter n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JAH4_AGRRK
spermidine/putrescine ABC transporter; K02055 putative spermidine/putrescine transport system substrate-binding protein
Spermidine/putrescine ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEA05644.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_2820_10
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11951..12859)
DNA (909bp) protein (303aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3I776_9RHIZ rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:EPE95233.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_2820_11
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12917..13270)
DNA (354bp) protein (118aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
alkylhydroperoxidase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000373FC73
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2820_12
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13336..13653
DNA (318bp) protein (106aa)
ArsR family transcriptional regulator n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000375B692
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:CDN55036.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
regulatory protein, ArsR
SCNpilot_expt_1000_bf_scaffold_2820_13
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13653..14210
DNA (558bp) protein (186aa)
sulfurtransferase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00037FFE11
Rhodanese-related sulfurtransferase {ECO:0000313|EMBL:EJL54407.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
rhodanese-like domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2820_14
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14235..15131)
DNA (897bp) protein (299aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium giardinii RepID=UPI00035CA107 rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACI56576.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_2820_15
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15241..17688
DNA (2448bp) protein (816aa)
dimethylglycine dehydrogenase; K00315 dimethylglycine dehydrogenase [EC:1.5.8.4] rbh
Dimethylglycine dehydrogenase n=6 Tax=Rhizobium meliloti RepID=F6BVC9_SINMB rbh
Dimethylglycine dehydrogenase {ECO:0000313|EMBL:KDP74925.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_2820_16
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17691..17801
DNA (111bp) protein (37aa)
FAD-dependent oxidoreductase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F51D1D
glycine cleavage system T protein (aminomethyltransferase)
Glycine cleavage system T protein (Aminomethyltransferase) {ECO:0000313|EMBL:AGB45970.1}; Flags: Precursor;; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
Displaying 16 items

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