ggKbase home page

SCNpilot_expt_1000_bf_scaffold_8101

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8101_1
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..707)
DNA (705bp) protein (235aa)
Peptide ABC transporter permease n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EP51_9RHOB
Peptide ABC transporter permease {ECO:0000313|EMBL:KGF69472.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
Dipeptide transport system permease protein dppB; K02033 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_8101_2
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1002..2117)
DNA (1116bp) protein (372aa)
Putative D,D-dipeptide-binding periplasmic protein DdpA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT33_9RHIZ
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGF69471.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
family 5 extracellular solute-binding protein
SCNpilot_expt_1000_bf_scaffold_8101_3
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2772..3797
DNA (1026bp) protein (342aa)
Transcriptional regulator, AraC family n=1 Tax=Rhodobacter sp. SW2 RepID=C8RY23_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KGF69470.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_8101_4
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3823..5259)
DNA (1437bp) protein (479aa)
succinate-semialdehyde dehydrogenase (NADP+) (EC:1.2.1.16) rbh
Alpha-ketoglutaric semialdehyde dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BYX4_9RHIZ rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:KGF69469.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
SCNpilot_expt_1000_bf_scaffold_8101_5
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5286..6071)
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003617821
CoA-transferase {ECO:0000313|EMBL:KGF69468.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8101_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6577..6894
DNA (318bp) protein (106aa)
Transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLA0_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EYR81559.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_8101_7
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6915..7424
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035F01F5
IclR family transcriptional regulator {ECO:0000313|EMBL:EZQ17724.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
IclR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_8101_8
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7449..8588)
DNA (1140bp) protein (380aa)
acyl-CoA dehydrogenase; K06446 acyl-CoA dehydrogenase [EC:1.3.99.-] rbh
acyl-CoA dehydrogenase n=1 Tax=Hoeflea sp. 108 RepID=UPI000380282A rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KGF69467.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
SCNpilot_expt_1000_bf_scaffold_8101_9
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8719..10869
DNA (2151bp) protein (717aa)
hypothetical protein; K11381 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003654895 rbh
MFS transporter {ECO:0000313|EMBL:KGF69466.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
SCNpilot_expt_1000_bf_scaffold_8101_10
unknown

Not on your lists

comp(11070..11315)
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8101_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11862..12305
DNA (444bp) protein (148aa)
Probable transcriptional regulator, AraC family n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6NAX2_RHOPA
AraC family transcriptional regulator
Probable transcriptional regulator, AraC family {ECO:0000313|EMBL:CAE26501.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCNpilot_expt_1000_bf_scaffold_8101_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12424..14598
DNA (2175bp) protein (725aa)
Probable outer membrane protein, TonB-dependent receptor n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6NAX1_RHOPA rbh
outer membrane protein TonB-dependent receptor rbh
Probable outer membrane protein, TonB-dependent receptor {ECO:0000313|EMBL:CAE26502.1}; Flags: Precursor;; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCNpilot_expt_1000_bf_scaffold_8101_13
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14828..15634)
DNA (807bp) protein (269aa)
Transcriptional regulator, IclR family n=1 Tax=Pseudomonas putida (strain GB-1) RepID=B0KIC9_PSEPG rbh
IclR family transcriptional regulator rbh
Transcriptional regulator, IclR family {ECO:0000313|EMBL:ABY97705.1}; TaxID=76869 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (strain GB-1).;"
SCNpilot_expt_1000_bf_scaffold_8101_14
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16179..17960
DNA (1782bp) protein (594aa)
TonB-dependent receptor n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RUE6_9BURK rbh
TonB-dependent receptor {ECO:0000313|EMBL:EFV95929.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
TonB-dependent receptor rbh
SCNpilot_expt_1000_bf_scaffold_8101_15
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18013..18840)
DNA (828bp) protein (276aa)
Periplasmic binding protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I4H9_RHOVT rbh
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein rbh
Periplasmic binding protein {ECO:0000313|EMBL:ADP70494.1}; Flags: Precursor;; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
SCNpilot_expt_1000_bf_scaffold_8101_16
Rhizobium lupini, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19963..20976)
DNA (1014bp) protein (338aa)
Iron ABC transporter permease n=1 Tax=Rhizobium lupini HPC(L) RepID=K5C2N4_RHILU rbh
Iron ABC transporter permease {ECO:0000313|EMBL:EKJ95792.1}; TaxID=1229491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium lupini HPC(L).;"
Iron ABC transporter permease rbh
SCNpilot_expt_1000_bf_scaffold_8101_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20973..21767)
DNA (795bp) protein (265aa)
iron ABC transporter ATP-binding protein n=1 Tax=Rhizobium radiobacter RepID=UPI00036FDE5D rbh
Iron ABC transporter ATP-binding protein {ECO:0000313|EMBL:EPR22459.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
Iron ABC transporter, ATP binding protein rbh
SCNpilot_expt_1000_bf_scaffold_8101_18
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21877..22098
DNA (222bp) protein (74aa)
monooxygenase, NtaA/SnaA/SoxA family (EC:1.14.13.-)
NtaA/SnaA/SoxA family monooxygenase n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UES6_RHIRD
Monooxygenase {ECO:0000313|EMBL:KJF72652.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
Displaying 18 items

View Taxonomy