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SCNpilot_expt_1000_bf_scaffold_1163

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1163_1
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..346)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LPB0_RHITR
Transmembrane transcriptional regulator (Anti-sigma factor) {ECO:0000313|EMBL:KEA06168.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1163_2
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(352..870)
DNA (519bp) protein (173aa)
RNA polymerase sigma70 n=1 Tax=Rhizobium giardinii RepID=UPI0003656CAC
RNA polymerase sigma70 {ECO:0000313|EMBL:KDP76183.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
sige3; RNA polymerase sigma-E factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_1163_3
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1135..1791)
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000363036B
Uncharacterized protein {ECO:0000313|EMBL:ENN87952.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1163_4
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1882..2745)
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U7F6_RHIRD
Metallophosphatase {ECO:0000313|EMBL:KJF73752.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1163_5
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2786..3274
DNA (489bp) protein (163aa)
ADP-ribose pyrophosphatase n=1 Tax=Rhizobium sp. CF080 RepID=J3BKG9_9RHIZ
DNA mismatch repair protein MutT {ECO:0000313|EMBL:KEQ09854.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
nudix hydrolase
SCNpilot_expt_1000_bf_scaffold_1163_6
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3281..4279)
DNA (999bp) protein (333aa)
Glutathione S-transferase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J7C5_AGRRK
glutathione S-transferase; K07393 putative glutathione S-transferase
Uncharacterized protein {ECO:0000313|EMBL:GAJ90653.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_expt_1000_bf_scaffold_1163_7
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4531..5085
DNA (555bp) protein (185aa)
Putative acetyltransferase n=1 Tax=Rhizobium sp. AP16 RepID=J2WS96_9RHIZ
Putative acetyltransferase {ECO:0000313|EMBL:EJK85888.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
acetyltransferase
SCNpilot_expt_1000_bf_scaffold_1163_8
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5072..5524)
DNA (453bp) protein (151aa)
Putative acetyltransferase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LKK4_RHITR
putative acetyltransferase
Putative acetyltransferase {ECO:0000313|EMBL:AGB71948.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1163_9
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5521..7590)
DNA (2070bp) protein (690aa)
Transmembrane protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HGA9_9RHIZ rbh
Transmembrane protein {ECO:0000313|EMBL:EPE97912.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1163_10
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7592..10411)
DNA (2820bp) protein (940aa)
RNA-binding protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B3DFD4 rbh
Aerotolerance regulator domain-containing protein {ECO:0000313|EMBL:AJD42005.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1163_11
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10408..11328)
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J1T2V4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ25956.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1163_12
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11345..12358)
DNA (1014bp) protein (338aa)
ATPase; K03924 MoxR-like ATPase [EC:3.6.3.-] rbh
ATPase AAA n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037117D7 rbh
ATPase {ECO:0000313|EMBL:EJT04338.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
SCNpilot_expt_1000_bf_scaffold_1163_13
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12539..13162
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00036A4021 rbh
Uncharacterized protein {ECO:0000313|EMBL:EPE97908.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
hypothetical protein; K09986 hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1163_14
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13159..13794
DNA (636bp) protein (212aa)
DNA mismatch repair protein MutT n=1 Tax=Rhizobium mongolense RepID=UPI0003B2F4D1 rbh
NUDIX hydrolase domain-containing protein {ECO:0000313|EMBL:AJD42001.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
NTP pyrophosphohydrolase rbh
SCNpilot_expt_1000_bf_scaffold_1163_15
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13791..15050
DNA (1260bp) protein (420aa)
polynucleotide adenylyltransferase; K00970 poly(A) polymerase [EC:2.7.7.19] rbh
poly(A) polymerase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037A3D5E rbh
tRNA nucleotidyltransferase/poly(A) polymerase {ECO:0000313|EMBL:EJB07382.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
SCNpilot_expt_1000_bf_scaffold_1163_16
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15051..15242)
DNA (192bp) protein (64aa)
small metal-binding protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00036E68DF
Uncharacterized protein {ECO:0000313|EMBL:CDM58600.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1163_17
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15354..15632)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2D7W6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJK85899.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1163_18
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15750..16661)
DNA (912bp) protein (304aa)
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coproporphyrinogenase {ECO:0000256|HAMAP-Rule:MF_00333};; EC=1.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00333};; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
hemF; coproporphyrinogen III oxidase (EC:1.3.3.3); K00228 coproporphyrinogen III oxidase [EC:1.3.3.3] rbh
coproporphyrinogen III oxidase n=1 Tax=Rhizobium giardinii RepID=UPI0003661EE5
SCNpilot_expt_1000_bf_scaffold_1163_19
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16825..17085
DNA (261bp) protein (87aa)
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9J7B1_AGRRK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEA06187.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_1163_20
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17190..18179
DNA (990bp) protein (330aa)
Flagellin/flagellar hook associated protein n=1 Tax=Rhizobium sp. CF080 RepID=J2HUJ9_9RHIZ
Flagellin domain protein {ECO:0000313|EMBL:EUC00604.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
flaA; flagella associated protein
SCNpilot_expt_1000_bf_scaffold_1163_21
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18235..19500)
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LMJ1_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB71936.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1163_22
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19599..19910)
DNA (312bp) protein (104aa)
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
tRNA methyltransferase n=1 Tax=Rhizobium mongolense RepID=UPI0003B76CF8
RNA methyltransferase, TrmH family
SCNpilot_expt_1000_bf_scaffold_1163_23
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20460..22343
DNA (1884bp) protein (628aa)
Uncharacterized ABC transporter ATP-binding protein HI_1051 n=1 Tax=Rhizobium sp. RepID=L0NG67_RHISP rbh
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:KEQ08881.1}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
ABC transporter ATP-binding protein; K06147 ATP-binding cassette, subfamily B, bacterial rbh
SCNpilot_expt_1000_bf_scaffold_1163_24
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22424..22864
DNA (441bp) protein (147aa)
Uncharacterized protein {ECO:0000313|EMBL:KFA92938.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
SCNpilot_expt_1000_bf_scaffold_1163_25
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22964..23704
DNA (741bp) protein (247aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031729CB
Methyltransferase {ECO:0000313|EMBL:KGM30586.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
methyltransferase
SCNpilot_expt_1000_bf_scaffold_1163_26
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23729..23992)
DNA (264bp) protein (88aa)
UPI0003CED505 related cluster n=1 Tax=unknown RepID=UPI0003CED505
hypothetical protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_expt_1000_bf_scaffold_1163_27
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23992..24252)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1M3E1_RHIL3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAK12384.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_1163_28
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24407..26275
DNA (1869bp) protein (623aa)
ABC transporter n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J7A6_AGRRK rbh
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial rbh
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:KEA06192.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_1163_29
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26617..27195
DNA (579bp) protein (193aa)
ubiquinol-cytochrome c reductase, iron-sulfur subunit; K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] rbh
Ubiquinol-cytochrome c reductase iron-sulfur subunit {ECO:0000256|RuleBase:RU004494}; EC=1.10.2.2 {ECO:0000256|RuleBase:RU004494};; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6U9Q3_SINMW rbh
SCNpilot_expt_1000_bf_scaffold_1163_30
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27209..28474
DNA (1266bp) protein (422aa)
Cytochrome b n=1 Tax=Rhizobium sp. RepID=L0NG61_RHISP
Cytochrome b {ECO:0000256|RuleBase:RU003385}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
fbcB; ubiquinol-cytochrome c reductase cytochrome b subunit; K00412 ubiquinol-cytochrome c reductase cytochrome b subunit rbh
Displaying items 1-30 of 43 in total

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