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SCNpilot_expt_1000_bf_scaffold_1191

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1191_1
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(334..2022)
DNA (1689bp) protein (563aa)
ATPase component of various ABC-type transport systems with duplicated ATPase domain n=1 Tax=Rhizobium sp. CF122 RepID=J2RA99_9RHIZ rbh
ATPase component of various ABC-type transport systems with duplicated ATPase domain {ECO:0000313|EMBL:EJL49547.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
putative ATP-binding component of ABC transporter; K02031 peptide/nickel transport system ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1191_2
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2019..2963)
DNA (945bp) protein (315aa)
Putative acetamidase/formamidase n=1 Tax=Rhizobium sp. CF122 RepID=J3BE11_9RHIZ rbh
Putative acetamidase/formamidase {ECO:0000313|EMBL:EJL49546.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
putative formamidase rbh
SCNpilot_expt_1000_bf_scaffold_1191_3
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3068..3202)
DNA (135bp) protein (45aa)
ABC-type dipeptide transport system, periplasmic component n=1 Tax=Rhizobium sp. CF122 RepID=J2I170_9RHIZ
ABC-type dipeptide transport system, periplasmic component {ECO:0000313|EMBL:EJL49545.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
substrate-binding ABC transporter protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1191_4
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3199..4617)
DNA (1419bp) protein (473aa)
ABC-type dipeptide transport system, periplasmic component n=1 Tax=Rhizobium sp. CF122 RepID=J2I170_9RHIZ rbh
ABC-type dipeptide transport system, periplasmic component {ECO:0000313|EMBL:EJL49545.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
extracellular solute-binding protein family 5 rbh
SCNpilot_expt_1000_bf_scaffold_1191_5
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4642..5562)
DNA (921bp) protein (307aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Rhizobium sp. CF122 RepID=J3BF81_9RHIZ rbh
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:EJL49544.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
putative permease component of ABC transporter; K02033 peptide/nickel transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_1191_6
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5562..6410)
DNA (849bp) protein (283aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Rhizobium sp. CF122 RepID=J2ILK0_9RHIZ rbh
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:EJL49543.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
binding-protein-dependent transport systems inner membrane component; K02034 peptide/nickel transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_1191_7
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6410..6991)
DNA (582bp) protein (194aa)
Response regulator with putative antiterminator output domain n=1 Tax=Rhizobium sp. CF122 RepID=J2RA96_9RHIZ rbh
Response regulator with putative antiterminator output domain {ECO:0000313|EMBL:EJL49542.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
ANTAR domain protein with unknown sensor
SCNpilot_expt_1000_bf_scaffold_1191_8
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6988..8133)
DNA (1146bp) protein (382aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Rhizobium sp. CF122 RepID=J3BE08_9RHIZ rbh
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJL49541.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
putative transcriptional regulator; K01999 branched-chain amino acid transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1191_9
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8896..9858
DNA (963bp) protein (321aa)
Flagellin/flagellar hook associated protein n=1 Tax=Rhizobium sp. CF080 RepID=J2HUJ9_9RHIZ rbh
Flagellin domain protein {ECO:0000313|EMBL:EUC00604.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
flaA; flagella associated protein rbh
SCNpilot_expt_1000_bf_scaffold_1191_10
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10085..10378
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V0I3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN87410.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1191_11
unknown

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10602..10910
DNA (309bp) protein (103aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1191_12
unknown

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comp(11013..11417)
DNA (405bp) protein (135aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1191_13
Rhizobium lupini, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11529..13574)
DNA (2046bp) protein (682aa)
NAD synthetase {ECO:0000313|EMBL:EKJ94750.1}; EC=6.3.5.1 {ECO:0000313|EMBL:EKJ94750.1};; TaxID=1229491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium lupini HPC(L).;"
nadE; NAD synthetase (EC:6.3.1.5); K01950 NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
NAD synthetase n=1 Tax=Rhizobium lupini HPC(L) RepID=K5CZD8_RHILU rbh
SCNpilot_expt_1000_bf_scaffold_1191_14
Mesorhizobium sp. L103C119B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13700..14701)
DNA (1002bp) protein (334aa)
6-phosphogluconate dehydrogenase; K00033 6-phosphogluconate dehydrogenase [EC:1.1.1.44]
UPI0003D04664 related cluster n=1 Tax=unknown RepID=UPI0003D04664
6-phosphogluconate dehydrogenase {ECO:0000313|EMBL:ESZ69346.1}; TaxID=1287085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C119B0.;"
SCNpilot_expt_1000_bf_scaffold_1191_15
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15030..15617
DNA (588bp) protein (196aa)
Nudix hydrolase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LX93_RHITR
nudix hydrolase
Nudix hydrolase {ECO:0000313|EMBL:AGB74779.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1191_16
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15706..16062
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3H8Q2_9RHIZ
Putative membrane protein {ECO:0000313|EMBL:CDM61572.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
VanZ family protein
SCNpilot_expt_1000_bf_scaffold_1191_17
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16101..16484)
DNA (384bp) protein (128aa)
Hypothetical conserved protein n=1 Tax=Rhizobium etli (strain CFN 42 / ATCC 51251) RepID=Q2K9T8_RHIEC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGS21444.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_1191_18
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16642..17085)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PVP8_RHIE6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACE92268.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
SCNpilot_expt_1000_bf_scaffold_1191_19
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17277..18191)
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VME7_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EJZ20061.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
polyphosphate kinase protein rbh
SCNpilot_expt_1000_bf_scaffold_1191_20
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18309..19310)
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037508E9 rbh
Ribonuclease {ECO:0000313|EMBL:KEC80567.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
hypothetical protein; K07058 membrane protein rbh
SCNpilot_expt_1000_bf_scaffold_1191_21
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19398..20249)
DNA (852bp) protein (284aa)
diguanylate cyclase n=1 Tax=Rhizobium leguminosarum RepID=UPI00035E5C44 rbh
Sensory box/GGDEF family protein {ECO:0000313|EMBL:EPE95519.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
diguanylate cyclase/phosphodiesterase rbh
SCNpilot_expt_1000_bf_scaffold_1191_22
unknown

Not on your lists

20335..21027
DNA (693bp) protein (231aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1191_23
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21232..22509
DNA (1278bp) protein (426aa)
Hemolysin n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=Q7CT66_AGRT5 rbh
Putative signal transduction protein with CBS domain containing protein {ECO:0000313|EMBL:EUB97180.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hemolysin; K03699 putative hemolysin rbh
SCNpilot_expt_1000_bf_scaffold_1191_24
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22666..23121
DNA (456bp) protein (152aa)
Nitrogen regulatory protein {ECO:0000313|EMBL:CCV16201.1}; EC=2.7.1.- {ECO:0000313|EMBL:CCV16201.1};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
Nitrogen regulatory protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FII8_9RHIZ
ptsN; putative PTS IIA-like nitrogen-regulatory protein
SCNpilot_expt_1000_bf_scaffold_1191_25
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23283..24386
DNA (1104bp) protein (368aa)
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:AJD42299.1}; EC=1.1.1.22 {ECO:0000313|EMBL:AJD42299.1};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
ugdH; UDP-glucose 6-dehydrogenase; K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22]
UDP-glucose 6-dehydrogenase n=1 Tax=Rhizobium mongolense RepID=UPI0003B4ECAF
SCNpilot_expt_1000_bf_scaffold_1191_26
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24331..24582
DNA (252bp) protein (84aa)
ugdH; UDP-glucose 6-dehydrogenase (EC:1.1.1.22); K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22]
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:ACP24628.1}; EC=1.1.1.22 {ECO:0000313|EMBL:ACP24628.1};; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00037847B0
SCNpilot_expt_1000_bf_scaffold_1191_27
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24583..25602
DNA (1020bp) protein (340aa)
lspL; UDP-glucuronate 5'-epimerase; K08679 UDP-glucuronate 4-epimerase [EC:5.1.3.6] rbh
UDP-glucuronate 5''''-epimerase n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI00036F97DB rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EJZ17216.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
SCNpilot_expt_1000_bf_scaffold_1191_28
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25710..26489
DNA (780bp) protein (260aa)
serine/threonine specific protein phosphatase; K07313 serine/threonine protein phosphatase 1 [EC:3.1.3.16]
Putative phosphohydrolase n=1 Tax=Rhizobium sp. AP16 RepID=J2CU48_9RHIZ
Putative phosphohydrolase {ECO:0000313|EMBL:EJK80624.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_1191_29
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26520..26768)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QCY3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF58871.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1191_30
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26934..27140
DNA (207bp) protein (69aa)
CsbD family protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZNX4_RHILW
Uncharacterized protein {ECO:0000313|EMBL:EZQ13774.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
CsbD family protein
Displaying items 1-30 of 60 in total

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