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SCNpilot_expt_1000_bf_scaffold_1220

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1220_1
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..319
DNA (318bp) protein (106aa)
ATPase central domain-containing protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XS52_RHIRD
ATPase central domain-containing protein {ECO:0000313|EMBL:CDN92216.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_expt_1000_bf_scaffold_1220_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

696..1010
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XZ48_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EHH03934.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1220_3
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1225..3351)
DNA (2127bp) protein (709aa)
Phage integrase family protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XZ49_RHIRD rbh
Phage integrase family protein {ECO:0000313|EMBL:EHH03935.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
phage integrase family protein rbh
SCNpilot_expt_1000_bf_scaffold_1220_4
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3780..5036
DNA (1257bp) protein (419aa)
D-amino acid dehydrogenase (EC:1.4.99.1); K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
FAD dependent oxidoreductase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HLQ6_9RHIZ
FAD dependent oxidoreductase {ECO:0000313|EMBL:EPE99792.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_expt_1000_bf_scaffold_1220_5
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5116..5928
DNA (813bp) protein (271aa)
FhuC-like siderophore ABC transporter, ATP-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LW43_RHITR
FhuC-like siderophore ABC transporter, ATP-binding protein
FhuC-like siderophore ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AGB74931.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1220_6
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5918..6829
DNA (912bp) protein (304aa)
ABC-type Fe3+-hydroxamate transport system, periplasmic component n=1 Tax=Rhizobium sp. AP16 RepID=J2WAR7_9RHIZ rbh
fhuD; ferrichrome-iron ABC transporter; K02016 iron complex transport system substrate-binding protein rbh
ABC-type Fe3+-hydroxamate transport system, periplasmic component {ECO:0000313|EMBL:EJK79933.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_1220_7
Streptomyces tsusimaensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(6993..7325)
DNA (333bp) protein (111aa)
Putative conserved protein n=1 Tax=Streptomyces tsusimaensis RepID=Q1PSF6_9ACTO
Putative conserved protein {ECO:0000313|EMBL:ABA59545.1}; TaxID=285482 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces tsusimaensis.;"
SCNpilot_expt_1000_bf_scaffold_1220_8
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7879..8784
DNA (906bp) protein (302aa)
ABC-type Fe3+-siderophore transport system, permease component n=1 Tax=Rhizobium sp. AP16 RepID=J2DB35_9RHIZ
Fe(3+)-ferrichrome ABC transporter permease protein {ECO:0000313|EMBL:GAJ93682.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
fhuB; iron-hydroxamate transporter permease subunit; K02015 iron complex transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1220_9
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8800..9492)
DNA (693bp) protein (231aa)
GntR family transcriptional regulator n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PK26_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:EKF61273.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1220_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9776..10876
DNA (1101bp) protein (367aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Spermidine/putrescine import ATP-binding protein PotA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1N6_9RHIZ rbh
spermidine/putrescine ABC transporter ATPase; K02052 putative spermidine/putrescine transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1220_11
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10878..11801
DNA (924bp) protein (308aa)
ABC transporter permease n=1 Tax=Xanthobacteraceae RepID=UPI00036BAC1E
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EHH12756.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
binding-protein-dependent transport system inner membrane protein; K11071 spermidine/putrescine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1220_12
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11794..12600
DNA (807bp) protein (269aa)
ABC transporter permease n=1 Tax=Hoeflea sp. 108 RepID=UPI00035D644E
Putrescine transporter subunit: membrane component of ABC superfamily {ECO:0000313|EMBL:CCV05548.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
binding-protein-dependent transport system inner membrane protein; K02053 putative spermidine/putrescine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1220_13
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12614..13648
DNA (1035bp) protein (345aa)
Putrescine-binding periplasmic protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y677_9RHIZ rbh
Putrescine-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR019574}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
family 1 extracellular solute-binding protein
SCNpilot_expt_1000_bf_scaffold_1220_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13825..15006
DNA (1182bp) protein (394aa)
6-aminohexanoate-dimer hydrolase NylB {ECO:0000313|EMBL:EYR77379.1}; EC=3.5.1.46 {ECO:0000313|EMBL:EYR77379.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
6-aminohexanoate-dimer hydrolase (EC:3.5.1.46)
6-aminohexanoate-dimer hydrolase NylB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ES37_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1220_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15034..16704
DNA (1671bp) protein (557aa)
Amidohydrolase 3 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUK4_9RHIZ rbh
Amidohydrolase 3 {ECO:0000313|EMBL:EYR77378.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative TIM-barrel fold metal-dependent hydrolase
SCNpilot_expt_1000_bf_scaffold_1220_16
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16868..18217
DNA (1350bp) protein (450aa)
glnA; glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2] rbh
Glutamine synthetase catalytic region n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FD26_9RHIZ rbh
Glutamine synthetase catalytic region {ECO:0000313|EMBL:EHS49296.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
SCNpilot_expt_1000_bf_scaffold_1220_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18219..19526
DNA (1308bp) protein (436aa)
ordL; oxidoreductase; K09471 gamma-glutamylputrescine oxidase [EC:1.4.3.-] rbh
gamma-glutamylputrescine oxidoreductase n=1 Tax=Rhizobium radiobacter RepID=UPI00037263F8 rbh
Gamma-glutamylputrescine oxidoreductase {ECO:0000313|EMBL:EPR08670.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
SCNpilot_expt_1000_bf_scaffold_1220_18
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19827..20342
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=Q7CRD5_AGRT5
Uncharacterized protein {ECO:0000313|EMBL:KDR87641.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1220_19
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20579..21250)
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003613D31 rbh
Uncharacterized protein {ECO:0000313|EMBL:EAP77752.1}; TaxID=89187 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius nubinhibens ISM.;"
YodA superfamily protein
SCNpilot_expt_1000_bf_scaffold_1220_20
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21375..22997)
DNA (1623bp) protein (541aa)
ABC transporter nucleotide binding/ATPase protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JRN0_AGRVS rbh
ABC transporter ATPase rbh
Glycosyl transferase family 1 {ECO:0000313|EMBL:KGE83064.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
SCNpilot_expt_1000_bf_scaffold_1220_21
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23288..24271
DNA (984bp) protein (328aa)
ABC transporter, substrate binding protein (Sulfate) n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UFN6_RHIRD rbh
Sulfate-binding protein {ECO:0000313|EMBL:AHK45902.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
sulfate ABC transporter sulfate-binding protein; K02048 sulfate transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1220_22
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24538..25359
DNA (822bp) protein (274aa)
Sulfate ABC transporter, permease protein CysT n=1 Tax=Rhizobium sp. CF080 RepID=J2TNF2_9RHIZ rbh
Sulfate ABC transporter, inner membrane subunit CysT {ECO:0000313|EMBL:EUB97924.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
ABC transporter permease; K02046 sulfate transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_1220_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26251..26616
DNA (366bp) protein (122aa)
Sulfate-transporting ATPase {ECO:0000256|SAAS:SAAS00085229}; EC=3.6.3.25 {ECO:0000256|SAAS:SAAS00085229};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Sulfate/thiosulfate import ATP-binding protein CysA 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQS2_9RHIZ
cysA2; sulfate/thiosulfate ABC transporter, ATP-binding component
Displaying 23 items

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