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SCNpilot_expt_1000_bf_scaffold_1263

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1263_1
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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325..1314
DNA (990bp) protein (330aa)
Putative ABC transporter, permease protein n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SH47_9BRAD rbh
ABC transporter permease rbh
Amino acid/amide ABC transporter membrane protein 1, HAAT family {ECO:0000313|EMBL:ABQ36843.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_expt_1000_bf_scaffold_1263_2
Jannaschia aquimarina, Jannaschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1314..2399
DNA (1086bp) protein (362aa)
ABC transporter ATP-binding protein n=1 Tax=Ahrensia sp. R2A130 RepID=E0MRR6_9RHOB rbh
Jannaschia aquimarina strain GSW-M26 jaqu_contig000037, whole genome shotgun sequence {ECO:0000313|EMBL:KIT16235.1}; TaxID=935700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Jannaschia.;" source="Jannaschia aquimarina.;"
ABC transporter ATP-binding protein; K01998 branched-chain amino acid transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_1263_3
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2399..3184
DNA (786bp) protein (262aa)
Recombination protein RecR n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HQH9_9BRAD rbh
Recombination protein RecR {ECO:0000313|EMBL:ERF86686.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
ABC transporter permease; K01995 branched-chain amino acid transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1263_4
Jannaschia aquimarina, Jannaschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3177..5396
DNA (2220bp) protein (740aa)
Uncharacterized protein n=1 Tax=Sagittula stellata E-37 RepID=A3K5P5_9RHOB rbh
LivF_4 protein {ECO:0000313|EMBL:KIT16233.1}; TaxID=935700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Jannaschia.;" source="Jannaschia aquimarina.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1263_5
Sagittula stellata, Sagittula, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5399..6229
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Sagittula stellata E-37 RepID=A3K5P4_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:EBA07433.1}; TaxID=388399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sagittula.;" source="Sagittula stellata E-37.;"
TIM-barrel signal transduction protein rbh
SCNpilot_expt_1000_bf_scaffold_1263_6
Ahrensia sp. R2A130, Ahrensia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6279..9374
DNA (3096bp) protein (1032aa)
Inner membrane protein YqiK n=1 Tax=Ahrensia sp. R2A130 RepID=E0MRR2_9RHOB rbh
Inner membrane protein YqiK {ECO:0000313|EMBL:EFL87830.1}; TaxID=744979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ahrensia.;" source="Ahrensia sp. R2A130.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1263_7
Sagittula stellata, Sagittula, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9383..9823
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Sagittula stellata E-37 RepID=A3K5P2_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EBA07431.1}; TaxID=388399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sagittula.;" source="Sagittula stellata E-37.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1263_8
Jannaschia aquimarina, Jannaschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9831..10286
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Sagittula stellata E-37 RepID=A3K5P1_9RHOB
Jannaschia aquimarina strain GSW-M26 jaqu_contig000037, whole genome shotgun sequence {ECO:0000313|EMBL:KIT16229.1}; TaxID=935700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Jannaschia.;" source="Jannaschia aquimarina.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1263_9
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10303..11115
DNA (813bp) protein (271aa)
oxidoreductase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000368F95E
Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein {ECO:0000313|EMBL:EJN10567.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1263_10
Ahrensia sp. R2A130, Ahrensia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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11120..11602
DNA (483bp) protein (161aa)
Carbon monoxide dehydrogenase, small subunit {ECO:0000313|EMBL:EFL87826.1}; EC=1.2.99.2 {ECO:0000313|EMBL:EFL87826.1};; TaxID=744979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ahrensia.;" source="Ahrensia sp. R2A130.;"
Carbon monoxide dehydrogenase, small subunit n=1 Tax=Ahrensia sp. R2A130 RepID=E0MRQ8_9RHOB
oxidoreductase iron-sulfur-binding protein subunit
SCNpilot_expt_1000_bf_scaffold_1263_11
Sagittula stellata, Sagittula, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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11611..13311
DNA (1701bp) protein (567aa)
Probable dehydrogenase n=1 Tax=Sagittula stellata E-37 RepID=A3K5N8_9RHOB rbh
Probable dehydrogenase {ECO:0000313|EMBL:EBA07427.1}; TaxID=388399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sagittula.;" source="Sagittula stellata E-37.;"
dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_1263_12
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13313..14335
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HA35_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:ERF86677.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
oxidoreductase subunit aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL rbh
SCNpilot_expt_1000_bf_scaffold_1263_13
Ahrensia sp. R2A130, Ahrensia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14570..15451
DNA (882bp) protein (294aa)
ATPase, AAA family n=1 Tax=Ahrensia sp. R2A130 RepID=E0MRQ5_9RHOB rbh
ATPase, AAA family {ECO:0000313|EMBL:EFL87823.1}; TaxID=744979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ahrensia.;" source="Ahrensia sp. R2A130.;"
ATPase rbh
SCNpilot_expt_1000_bf_scaffold_1263_14
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15448..16563
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TUX7_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:CCE10265.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein; K07161 rbh
SCNpilot_expt_1000_bf_scaffold_1263_15
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16560..17498
DNA (939bp) protein (313aa)
amidohydrolase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI000373BB2C rbh
Uncharacterized protein {ECO:0000313|EMBL:AHY51701.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
hypothetical protein; K07046 rbh
SCNpilot_expt_1000_bf_scaffold_1263_16
Sagittula stellata, Sagittula, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17502..19097
DNA (1596bp) protein (532aa)
gluconolactonase; K01053 gluconolactonase [EC:3.1.1.17] rbh
Putative gluconolactonase n=1 Tax=Sagittula stellata E-37 RepID=A3K5N2_9RHOB rbh
Putative gluconolactonase {ECO:0000313|EMBL:EBA07421.1}; TaxID=388399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sagittula.;" source="Sagittula stellata E-37.;"
SCNpilot_expt_1000_bf_scaffold_1263_17
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19152..19898)
DNA (747bp) protein (249aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] rbh
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YM64_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EIM25056.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
SCNpilot_expt_1000_bf_scaffold_1263_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19962..20801)
DNA (840bp) protein (280aa)
Ureidoglycolate lyase {ECO:0000313|EMBL:EYR80853.1}; EC=4.3.2.3 {ECO:0000313|EMBL:EYR80853.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Ureidoglycolate lyase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1J6_9RHIZ
5-carboxymethyl-2-hydroxymuconate delta-isomerase
SCNpilot_expt_1000_bf_scaffold_1263_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20910..21587
DNA (678bp) protein (226aa)
HTH-type transcriptional repressor CsiR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWZ5_9RHIZ
HTH-type transcriptional repressor CsiR {ECO:0000313|EMBL:EYR80854.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ygaE; GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1263_20
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21601..22821)
DNA (1221bp) protein (407aa)
ROK family protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V2R1_9RHIZ rbh
ROK family transcriptional regulator {ECO:0000313|EMBL:KDP73089.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1263_21
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23001..24590
DNA (1590bp) protein (530aa)
N-acyl-D-amino acid deacylase n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI00039C289A rbh
N-acyl-D-amino-acid deacylase rbh
N-acyl-D-amino-acid deacylase {ECO:0000313|EMBL:BAI74348.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_expt_1000_bf_scaffold_1263_22
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24615..25304)
DNA (690bp) protein (230aa)
Sulfate/thiosulfate import ATP-binding protein CysA {ECO:0000256|HAMAP-Rule:MF_01701}; EC=3.6.3.25 {ECO:0000256|HAMAP-Rule:MF_01701};; Sulfate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01701}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
sulfate ABC transporter ATP-binding protein; K02045 sulfate transport system ATP-binding protein [EC:3.6.3.25]
Putative ATP-binding component of ABC transporter n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HMA4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1263_23
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25267..25656)
DNA (390bp) protein (130aa)
Sulfate/thiosulfate import ATP-binding protein CysA {ECO:0000256|HAMAP-Rule:MF_01701}; EC=3.6.3.25 {ECO:0000256|HAMAP-Rule:MF_01701};; Sulfate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01701}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
putative ATP-binding component of ABC transporter; K02045 sulfate transport system ATP-binding protein [EC:3.6.3.25]
Sulfate ABC transporter ATPase n=1 Tax=Rhizobium sp. Pop5 RepID=K0VJG8_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1263_24
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25668..26549)
DNA (882bp) protein (294aa)
sulfate/thiosulfate transporter permease subunit n=1 Tax=Rhizobium meliloti RepID=UPI00036A33BC rbh
sulfate ABC transporter permease; K02047 sulfate transport system permease protein rbh
ABC-type sulfate transport system, periplasmic component {ECO:0000313|EMBL:AEH83711.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_expt_1000_bf_scaffold_1263_25
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26539..27081)
DNA (543bp) protein (181aa)
ABC transporter, permease n=2 Tax=Rhizobium meliloti RepID=F7XGN4_SINMM
sulfate ABC transporter permease; K02046 sulfate transport system permease protein
ABC transporter, permease {ECO:0000313|EMBL:CAC49111.1}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
SCNpilot_expt_1000_bf_scaffold_1263_26
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27030..27395)
DNA (366bp) protein (122aa)
sulfate/thiosulfate transporter subunit n=1 Tax=Rhizobium giardinii RepID=UPI0003826CEE
cysT; sulfate ABC transporter permease CysT; K02046 sulfate transport system permease protein
Sulfate/thiosulfate transporter subunit {ECO:0000313|EMBL:KEA08759.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_1263_27
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27402..28427)
DNA (1026bp) protein (342aa)
sulfate transporter subunit n=1 Tax=Rhizobium giardinii RepID=UPI00038019F7 rbh
Sulfate transporter subunit {ECO:0000313|EMBL:KDP72670.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
sulfate ABC transporter substrate-binding protein; K02048 sulfate transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1263_28
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28833..29303
DNA (471bp) protein (157aa)
Rrf2 family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI000366C605
Putative Rrf2 family protein {ECO:0000313|EMBL:AHK46067.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
transcriptional regulator, BadM/Rrf2 family
SCNpilot_expt_1000_bf_scaffold_1263_29
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29764..30984
DNA (1221bp) protein (407aa)
UPF0061 protein PMI07_06371 n=1 Tax=Rhizobium sp. CF080 RepID=J3B4Q2_9RHIZ
UPF0061 protein PMI07_003045 {ECO:0000256|HAMAP-Rule:MF_00692}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1263_30
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31061..31339)
DNA (279bp) protein (93aa)
DNA-binding HU-like protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5SRF0_RHIET
DNA-binding HU-like protein
DNA-binding HU-like protein {ECO:0000313|EMBL:AGS24582.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
Displaying items 1-30 of 32 in total

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