ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1277

Search features with annotation key words

Displaying items 1-30 of 67 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1277_1
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..502)
DNA (501bp) protein (167aa)
Transcriptional regulator, LacI family n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F3D9_9RHIZ
Transcriptional regulator, LacI family {ECO:0000313|EMBL:EHS52778.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
putative transcriptional regulatory protein, LacI family
SCNpilot_expt_1000_bf_scaffold_1277_2
unknown

Not on your lists

785..964
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1277_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1277..2347
DNA (1071bp) protein (357aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036330B9
Uncharacterized protein {ECO:0000313|EMBL:KIZ42764.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1277_4
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2896..3300
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037D7E31
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF82848.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
SCNpilot_expt_1000_bf_scaffold_1277_5
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3391..4392
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Methylobacterium sp. MB200 RepID=UPI0003457963
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK82207.1}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
SCNpilot_expt_1000_bf_scaffold_1277_6
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4678..4974
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A232_RHIFH
Uncharacterized protein {ECO:0000313|EMBL:KEC80938.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1277_7
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4971..5891
DNA (921bp) protein (307aa)
Metallo-beta-lactamase superfamily protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LI32_RHITR
metallo-beta-lactamase superfamily protein
Metallo-beta-lactamase superfamily protein {ECO:0000313|EMBL:AGB70376.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1277_8
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6068..6955
DNA (888bp) protein (296aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI00036A2D6A
Transcriptional regulator {ECO:0000313|EMBL:KGF71219.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1277_9
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7023..7940)
DNA (918bp) protein (306aa)
Putative membrane protein n=1 Tax=Rhizobium sp. CF122 RepID=J2RQ37_9RHIZ
Putative membrane protein {ECO:0000313|EMBL:EJL54577.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1277_10
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8316..8711
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZT13_RHILW
Uncharacterized protein {ECO:0000313|EMBL:CDM56771.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1277_11
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8782..9057
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NB20_RHISP
Uncharacterized protein {ECO:0000313|EMBL:AHK43678.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1277_12
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9129..11807)
DNA (2679bp) protein (893aa)
Pyruvate phosphate dikinase {ECO:0000313|EMBL:KEA05549.1}; EC=2.7.9.1 {ECO:0000313|EMBL:KEA05549.1};; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
ppdK; pyruvate phosphate dikinase; K01006 pyruvate,orthophosphate dikinase [EC:2.7.9.1] rbh
Pyruvate, phosphate dikinase n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JAT8_AGRRK rbh
SCNpilot_expt_1000_bf_scaffold_1277_13
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11965..13590)
DNA (1626bp) protein (542aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000373C912 rbh
diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:AGB74640.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1277_14
Candidatus Magnetoovum chiemensis, Candidatus Magnetoovum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(13887..14150)
DNA (264bp) protein (88aa)
Putative uncharacterized protein n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2WAP1_MAGSA
Uncharacterized protein {ECO:0000313|EMBL:KJR40635.1}; TaxID=1609970 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Candidatus Magnetoovum.;" source="Candidatus Magnetoovum chiemensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1277_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14375..15361)
DNA (987bp) protein (329aa)
Magnesium transport protein CorA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5Y6_9RHIZ
Magnesium transport protein CorA {ECO:0000313|EMBL:EYR84341.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
corA1; magnesium/cobalt transporter CorA rbh
SCNpilot_expt_1000_bf_scaffold_1277_16
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15599..19060)
DNA (3462bp) protein (1154aa)
chromosome segregation protein SMC n=1 Tax=Rhizobium leguminosarum RepID=UPI000374D6CF rbh
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
smc; chromosome partition protein Smc rbh
SCNpilot_expt_1000_bf_scaffold_1277_17
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19172..19843)
DNA (672bp) protein (224aa)
disulfide bond formation protein DsbD n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000382439B
Protein-disulfide isomerase {ECO:0000313|EMBL:EJL54583.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
disulfide bond formation protein D
SCNpilot_expt_1000_bf_scaffold_1277_18
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20024..20551)
DNA (528bp) protein (176aa)
Uncharacterized protein n=2 Tax=Agrobacterium RepID=F0L7N4_AGRSH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ99154.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
SCNpilot_expt_1000_bf_scaffold_1277_19
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20548..21390)
DNA (843bp) protein (281aa)
Glycosyltransferase involved in LPS biosynthesis n=1 Tax=Rhizobium sp. AP16 RepID=J2D6X4_9RHIZ
Glycosyltransferase involved in LPS biosynthesis {ECO:0000313|EMBL:EJK78392.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
glycosyl transferase family 25
SCNpilot_expt_1000_bf_scaffold_1277_20
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21410..21703
DNA (294bp) protein (98aa)
A/G-specific adenine glycosylase; K03575 A/G-specific adenine glycosylase [EC:3.2.2.-]
A/G-specific adenine glycosylase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HKY1_9RHIZ
Adenine glycosylase {ECO:0000313|EMBL:KDP72151.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_1277_21
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21719..22489
DNA (771bp) protein (257aa)
mutY; A/G-specific adenine glycosylase; K03575 A/G-specific adenine glycosylase [EC:3.2.2.-]
A/G-specific adenine glycosylase n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JAT1_AGRRK
Adenine glycosylase {ECO:0000313|EMBL:KEA05542.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_1277_22
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22493..23107
DNA (615bp) protein (205aa)
HAD superfamily hydrolase protein n=2 Tax=Rhizobium etli RepID=S5RSN4_RHIET
HAD superfamily hydrolase protein
Hydrolase {ECO:0000313|EMBL:KEC72879.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
SCNpilot_expt_1000_bf_scaffold_1277_23
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23122..23388)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JT60_AGRVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM35773.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_1277_24
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23426..24940)
DNA (1515bp) protein (505aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JT60_AGRVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM35773.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_1277_25
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25138..26268)
DNA (1131bp) protein (377aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
ccrM; site-specific DNA-methyltransferase (adenine-specific) protein (EC:2.1.1.72); K13581 modification methylase [EC:2.1.1.72] rbh
DNA methylase N-4/N-6 n=1 Tax=Rhizobium sp. Pop5 RepID=K0WAN5_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_1277_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26451..28157
DNA (1707bp) protein (569aa)
von willebrand factor type A n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY75_9RHIZ rbh
von willebrand factor type A {ECO:0000313|EMBL:EYR79218.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
von Willebrand factor type A; K07114 uncharacterized protein
SCNpilot_expt_1000_bf_scaffold_1277_27
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28400..28756)
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00035F7A19
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:EHP41796.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1277_28
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29114..29809
DNA (696bp) protein (232aa)
Transcriptional regulator protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5RSM8_RHIET rbh
transcriptional regulator protein rbh
Transcriptional regulator protein {ECO:0000313|EMBL:AGS20858.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_1277_29
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29951..30541)
DNA (591bp) protein (197aa)
Putative high-efficiency biotin transporter BioY n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LG23_RHITR
bioY2; putative high-efficiency biotin transporter BioY
Putative high-efficiency biotin transporter BioY {ECO:0000313|EMBL:AGB70358.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1277_30
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30929..31597)
DNA (669bp) protein (223aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF142 RepID=J2AZD1_9RHIZ rbh
Transcriptional regulator {ECO:0000313|EMBL:EJJ28930.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
transcriptional regulator protein rbh
Displaying items 1-30 of 67 in total

View Taxonomy